MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.9 nTPM
HPA Brain:132.5 nTPM
GTEx:32.9 nTPM
FANTOM5:265.5 Scaled Tags Per Million
Pig:77.8 nTPM
Mouse:27.1 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 132.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.3
1830 Male, age 51, unknown 141.5
1833 Male, age 53, unknown 135.1
1870 Female, age 42, unknown 135.1
2411 Female, age 72, unknown 132.2
2019 Male, age 18, unknown 121.9
2828 Female, age 72, unknown 113.4
1827 Male, age 72, unknown 92.4
2219 Male, age 76, both hemispheres 88.7
2666 Male, age 74, left hemisphere 86.0
2586 Male, age 75, left hemisphere 66.4
Dorsal raphe nucleus
nTPM: 94.4
2750 Male, age 76, both hemispheres 130.2
2016 Female, age 72, unknown 99.0
1828 Male, age 53, unknown 90.6
2298 Female, age 72, unknown 76.8
2047 Male, age 72, unknown 75.2
Inferior colliculus
nTPM: 90.1
1848 Female, age 42, unknown 95.5
1890 Male, age 53, unknown 92.3
2849 Male, age 72, unknown 89.2
2097 Female, age 72, unknown 83.2
Median raphe nucleus
nTPM: 100.6
2220 Male, age 76, midline 100.6
Periaquaductal grey, anterior
nTPM: 85.3
2502 Female, age 75, unknown 93.4
1947 Male, age 18, unknown 89.4
1795 Male, age 51, unknown 73.0
Periaquaductal grey, dorsal
nTPM: 81.9
2464 Female, age 72, unknown 100.2
2850 Male, age 76, both hemispheres 88.2
1831 Male, age 72, unknown 81.1
1840 Male, age 53, unknown 58.2
Periaquaductal grey, lateral
nTPM: 94.8
2272 Male, age 74, both hemispheres 99.1
2053 Male, age 18, unknown 95.6
2140 Male, age 76, both hemispheres 89.8
Pretectal area
nTPM: 92.9
2316 Male, age 76, right hemisphere 116.6
2407 Male, age 75, both hemispheres 111.7
1815 Male, age 53, unknown 107.9
2667 Female, age 75, unknown 102.0
2273 Male, age 74, both hemispheres 96.8
2825 Male, age 18, unknown 91.1
1817 Female, age 42, unknown 88.9
2224 Female, age 72, unknown 84.6
2007 Male, age 72, unknown 84.4
1944 Female, age 72, unknown 72.9
1816 Male, age 51, unknown 64.8
Red nucleus
nTPM: 132.5
1865 Male, age 51, unknown 160.1
1904 Male, age 53, unknown 158.0
1821 Female, age 72, unknown 148.5
1954 Female, age 42, unknown 144.3
2823 Male, age 76, right hemisphere 140.1
2227 Male, age 72, unknown 135.8
2785 Male, age 18, unknown 135.1
2769 Male, age 72, unknown 134.4
2503 Female, age 72, unknown 127.5
2725 Female, age 75, unknown 109.5
2588 Male, age 74, left hemisphere 104.3
2584 Male, age 75, left hemisphere 92.0
Substantia nigra
nTPM: 92.3
2409 Female, age 72, unknown 113.3
1851 Male, age 51, unknown 99.3
2583 Male, age 75, right hemisphere 98.3
2241 Male, age 72, unknown 98.1
1889 Female, age 72, unknown 96.6
2590 Female, age 75, unknown 94.7
2699 Male, age 18, unknown 92.7
1941 Male, age 53, unknown 81.6
1916 Female, age 42, unknown 77.5
2665 Male, age 74, both hemispheres 70.7
Superior colliculus
nTPM: 104.1
1913 Female, age 42, unknown 147.4
1995 Male, age 72, unknown 138.4
1895 Male, age 76, right hemisphere 117.4
2587 Male, age 74, left hemisphere 109.9
1839 Male, age 51, unknown 105.7
2668 Female, age 75, unknown 95.7
1796 Male, age 53, unknown 87.6
2087 Female, age 72, unknown 81.5
2261 Male, age 18, unknown 81.5
2664 Male, age 75, both hemispheres 75.6
Ventral tegmental area
nTPM: 101.7
2410 Female, age 72, unknown 119.3
2223 Female, age 72, unknown 114.3
2021 Male, age 53, unknown 101.5
2218 Male, age 76, both hemispheres 94.3
1942 Male, age 51, unknown 91.6
1915 Female, age 42, unknown 89.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.9
Samples: 139

Max nTPM: 105.9
Min nTPM: 15.3
Std nTPM: 14.9
Median nTPM: 29.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 105.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 102.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 75.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 68.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 66.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 64.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 62.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 61.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 58.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 57.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 56.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 265.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 265.5
FF:10158-103A5 76 years, female 265.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 77.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.5
Samples: 4

Max nTPM: 117.8
Min nTPM: 47.5
Sample A Female 82.0
Sample B Female 47.5
Sample C Male 62.5
Sample D Male 117.8
Midbrain
nTPM: 77.9
Samples: 4

Max nTPM: 151.1
Min nTPM: 43.9
Sample A Female 151.1
Sample B Female 68.6
Sample C Male 43.9
Sample D Male 47.8
Periaqueductal gray
nTPM: 50.6
Samples: 3

Max nTPM: 58.3
Min nTPM: 42.2
Sample B Female 58.3
Sample C Male 42.2
Sample D Male 51.2
Superior colliculi
nTPM: 58.6
Samples: 4

Max nTPM: 73.1
Min nTPM: 32.4
Sample A Female 73.1
Sample B Female 32.4
Sample C Male 58.4
Sample D Male 70.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 28.6
Min nTPM: 23.7
Sample A Male 23.7
Sample B Male 28.6
Sample C Female 28.4
Sample D Female 27.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
71234644 Antisense, RP_050505_02_G06, Mouse strain C57BL/6J (56 days, male) 2.0

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