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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:132.2 nTPM
HPA Brain:74.3 nTPM
GTEx:132.2 nTPM
FANTOM5:47.2 Scaled Tags Per Million
Pig:53.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 67.5
1981 Female, age 72, midline 86.6
2565 Male, age 75, midline 71.8
2194 Female, age 79, both hemispheres 66.1
2048 Male, age 55, midline 57.7
2816 Male, age 47, midline 55.1
Cervical spinal cord, dorsal horn
nTPM: 65.3
2173 Female, age 72, unknown 88.0
2069 Male, age 47, both hemispheres 75.3
2296 Male, age 66, both hemispheres 75.0
1877 Male, age 55, unknown 58.9
2297 Male, age 75, both hemispheres 52.5
2721 Male, age 90, both hemispheres 42.2
Cervical spinal cord, ventral horn
nTPM: 74.3
2098 Female, age 72, unknown 92.3
2809 Male, age 90, both hemispheres 81.8
2480 Male, age 75, both hemispheres 79.5
2295 Male, age 66, both hemispheres 70.3
2068 Male, age 55, unknown 70.0
2820 Female, age 79, both hemispheres 51.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 132.2
Samples: 159

Max nTPM: 239.6
Min nTPM: 56.4
Std nTPM: 31.0
Median nTPM: 130.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 239.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 236.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 224.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 213.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 199.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 195.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 195.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 189.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 181.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 181.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 179.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 177.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 174.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 171.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 171.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 171.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 170.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 167.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 164.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 163.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 163.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 162.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 161.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 161.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 160.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 160.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 159.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 157.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 157.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 156.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 156.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 155.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 155.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 154.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 152.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 150.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 149.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 149.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 149.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 148.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 148.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 148.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 147.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 147.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 147.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 146.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 146.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 145.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 145.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 145.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 143.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 143.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 143.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 143.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 142.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 142.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 142.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 140.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 140.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 140.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 140.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 139.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 138.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 138.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 138.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 137.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 137.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 136.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 136.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 135.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 135.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 134.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 133.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 133.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 133.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 133.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 133.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 132.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 131.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 130.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 130.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 129.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 129.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 128.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 128.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 126.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 125.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 125.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 124.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 123.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 123.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 123.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 123.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 122.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 121.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 121.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 121.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 121.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 120.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 119.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 119.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 119.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 118.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 118.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 118.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 117.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 116.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 116.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 116.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 116.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 115.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 114.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 114.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 113.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 113.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 111.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 110.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 110.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 110.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 108.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 108.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 108.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 107.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 107.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 107.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 106.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 105.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 105.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 104.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 104.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 103.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 103.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 102.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 102.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 102.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 101.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 101.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 99.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 99.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 99.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 98.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 97.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 97.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 97.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 96.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 95.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 94.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 92.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 89.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 88.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 88.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 87.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 83.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 82.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 82.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 82.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 81.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 66.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 56.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 47.2
FF:10181-103D1 60 years, female 60.0
FF:10159-103A6 76 years, female 34.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 50.3
Samples: 4

Max nTPM: 61.3
Min nTPM: 39.4
Sample A Female 39.4
Sample B Female 54.2
Sample C Male 61.3
Sample D Male 46.1
Ventral spinal cord
nTPM: 53.0
Samples: 4

Max nTPM: 58.8
Min nTPM: 45.7
Sample A Female 45.7
Sample B Female 58.8
Sample C Male 58.5
Sample D Male 49.1

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