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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:557.5 nTPM
GTEx:557.5 nTPM
FANTOM5:1468.4 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA066240
Squamous epithelial cells Not detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

557.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 557.5
Samples: 156

Max nTPM: 1439.5
Min nTPM: 86.0
Std nTPM: 303.2
Median nTPM: 520.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1439.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1431.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1421.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1381.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1247.9
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1237.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1201.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1182.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1093.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1090.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1075.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1059.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1052.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1027.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1021.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1019.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1014.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 986.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 977.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 934.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 911.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 911.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 885.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 875.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 870.4
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 870.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 862.9
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 826.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 817.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 813.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 812.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 801.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 789.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 762.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 756.8
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 755.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 740.2
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 736.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 732.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 729.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 710.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 706.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 695.0
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 690.4
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 689.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 686.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 685.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 674.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 672.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 662.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 659.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 656.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 651.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 616.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 609.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 597.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 597.3
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 587.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 585.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 585.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 582.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 580.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 580.8
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 577.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 572.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 568.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 561.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 556.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 550.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 549.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 546.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 545.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 537.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 529.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 529.3
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 526.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 521.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 521.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 519.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 515.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 512.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 511.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 504.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 498.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 472.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 469.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 467.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 455.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 446.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 444.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 442.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 439.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 429.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 421.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 415.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 405.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 399.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 394.1
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 389.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 384.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 378.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 373.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 370.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 367.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 364.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 361.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 356.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 354.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 353.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 351.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 346.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 341.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 331.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 329.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 321.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 313.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 306.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 306.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 304.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 304.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 302.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 298.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 297.1
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 291.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 286.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 276.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 275.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 272.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 271.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 270.6
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 267.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 266.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 262.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 260.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 257.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 243.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 238.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 230.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 227.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 226.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 221.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 220.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 215.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 210.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 201.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 200.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 194.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 188.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 184.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 174.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 163.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 152.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 124.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 121.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 107.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 86.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1468.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 1468.4
FF:10204-103F6 68 years, female 1468.4

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