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TXNL4A
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:139.4 nTPM
HPA Brain:51.4 nTPM
GTEx:139.4 nTPM
FANTOM5:107.4 Scaled Tags Per Million
Pig:24.4 nTPM
Mouse:9.9 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.4
Sample id Sample description nTPM
Amygdala
nTPM: 50.6
2814 Male, age 76, right hemisphere 58.8
2514 Male, age 75, right hemisphere 55.6
2695 Female, age 67, right hemisphere 47.2
1987 Female, age 91, left hemisphere 46.5
2517 Female, age 94, left hemisphere 45.1
Basal amygdala
nTPM: 48.7
2685 Female, age 94, left hemisphere 54.0
2110 Male, age 80, left hemisphere 51.7
2243 Female, age 91, right hemisphere 50.5
2827 Female, age 67, right hemisphere 45.6
2609 Male, age 75, right hemisphere 45.3
1955 Male, age 76, both hemispheres 45.2
Central amygdala
nTPM: 51.4
2826 Female, age 94, left hemisphere 59.9
1905 Male, age 76, both hemispheres 57.7
2515 Male, age 75, right hemisphere 51.4
2239 Male, age 80, left hemisphere 50.8
2701 Female, age 91, right hemisphere 37.3
Corticomedial amygdala
nTPM: 50.5
2829 Male, age 80, left hemisphere 58.5
2242 Female, age 91, right hemisphere 56.6
2429 Female, age 94, left hemisphere 52.7
2428 Male, age 75, right hemisphere 49.0
2240 Male, age 76, both hemispheres 48.0
2535 Female, age 67, right hemisphere 38.5
Lateral amygdala
nTPM: 49.5
2534 Female, age 94, left hemisphere 58.1
1883 Male, age 76, both hemispheres 53.3
2516 Male, age 75, right hemisphere 52.3
2256 Male, age 80, left hemisphere 46.8
2830 Female, age 67, right hemisphere 43.3
2255 Female, age 91, right hemisphere 42.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 139.4
Samples: 152

Max nTPM: 410.6
Min nTPM: 44.8
Std nTPM: 49.5
Median nTPM: 129.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 410.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 384.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 309.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 292.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 232.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 224.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 223.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 221.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 221.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 217.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 201.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 200.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 199.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 196.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 192.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 190.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 186.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 184.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 183.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 182.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 182.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 178.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 177.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 174.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 173.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 172.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 167.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 167.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 165.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 164.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 163.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 163.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 159.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 158.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 157.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 155.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 154.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 154.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 152.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 151.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 151.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 151.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 149.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 149.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 148.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 148.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 147.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 147.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 147.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 147.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 145.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 144.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 144.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 144.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 144.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 144.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 143.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 142.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 141.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 141.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 141.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 140.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 140.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 140.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 139.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 139.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 134.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 134.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 134.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 132.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 131.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 130.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 129.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 129.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 129.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 129.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 129.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 129.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 128.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 128.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 128.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 128.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 128.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 127.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 126.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 125.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 125.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 125.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 125.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 125.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 124.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 124.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 123.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 121.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 121.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 120.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 119.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 119.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 119.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 118.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 118.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 118.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 118.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 117.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 117.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 116.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 116.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 115.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 115.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 114.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 114.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 113.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 112.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 110.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 110.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 110.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 109.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 109.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 108.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 108.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 107.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 107.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 106.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 104.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 104.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 104.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 103.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 103.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 102.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 101.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 100.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 97.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 96.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 96.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 94.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 92.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 91.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 90.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 87.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 87.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 87.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 87.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 81.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 78.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 77.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 75.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 75.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 74.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 72.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 44.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 107.4
FF:10151-102I7 76 years, female 107.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.4
Pig sample Sample description nTPM
Amygdala
nTPM: 24.4
Samples: 4

Max nTPM: 29.1
Min nTPM: 22.4
Sample A Female 29.1
Sample B Female 23.6
Sample C Male 22.4
Sample D Male 22.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 9.9
Samples: 4

Max nTPM: 11.8
Min nTPM: 8.8
Sample A Male 9.4
Sample B Male 8.8
Sample C Female 11.8
Sample D Female 9.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
68795466 Antisense, RP_050118_01_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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