We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
IFITM3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • IFITM3
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:582.3 nTPM
HPA:226.7 nTPM
GTEx:582.3 nTPM
FANTOM5:436.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004337
Glandular cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.7
overview
Male, age 65
Small intestine sample 232
nTPM: 139.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 206.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 317.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 243.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

582.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 582.3
Samples: 187

Max nTPM: 2154.8
Min nTPM: 155.2
Std nTPM: 403.9
Median nTPM: 437.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2154.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 2050.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2008.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1860.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1674.2
GTEX-1192X-2526-SM-59868 50-59 years, male 1498.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1476.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1460.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1439.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1432.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1401.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1382.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1378.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1358.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1325.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1303.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1211.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1157.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1153.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1140.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1129.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1072.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1063.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1049.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1016.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 983.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 980.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 946.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 931.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 912.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 906.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 884.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 881.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 866.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 848.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 847.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 846.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 844.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 838.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 835.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 835.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 828.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 818.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 809.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 808.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 799.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 798.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 790.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 781.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 771.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 757.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 744.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 740.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 721.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 720.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 718.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 705.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 703.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 703.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 680.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 663.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 662.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 662.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 645.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 638.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 630.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 607.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 589.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 588.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 585.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 582.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 577.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 556.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 554.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 552.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 550.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 549.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 547.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 546.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 527.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 526.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 524.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 521.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 514.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 497.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 493.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 481.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 468.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 467.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 456.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 450.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 448.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 444.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 437.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 435.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 435.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 432.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 423.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 420.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 410.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 401.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 396.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 396.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 389.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 382.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 381.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 380.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 371.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 365.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 364.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 351.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 350.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 347.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 347.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 338.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 338.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 337.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 337.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 335.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 333.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 333.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 324.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 324.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 315.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 313.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 306.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 303.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 303.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 300.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 299.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 298.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 296.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 295.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 295.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 292.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 292.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 286.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 285.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 283.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 280.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 278.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 278.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 276.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 275.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 273.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 271.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 268.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 268.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 265.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 258.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 252.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 251.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 251.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 249.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 245.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 245.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 243.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 243.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 241.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 241.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 239.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 236.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 233.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 232.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 227.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 223.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 222.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 221.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 220.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 216.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 214.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 210.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 207.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 206.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 205.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 201.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 200.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 200.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 195.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 194.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 191.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 190.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 178.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 171.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 168.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 164.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 155.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

436.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 436.9
FF:10024-101D6 15,40,85 years, mixed 436.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org