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SLC47A1
HPA
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  • SLC47A1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC47A1
Synonyms FLJ10847, MATE1
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 47 member 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 17
Cytoband p11.2
Chromosome location (bp) 19495385 - 19579034
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000142494 (version 109)
Entrez gene 55244
HGNC HGNC:25588
UniProt Q96FL8 (UniProt - Evidence at protein level)
neXtProt NX_Q96FL8
GeneCards SLC47A1
Antibodypedia SLC47A1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Multidrug efflux pump that functions as a H(+)/organic cation antiporter 1, 2. Plays a physiological role in the excretion of cationic compounds including endogenous metabolites, drugs, toxins through the kidney and liver, into urine and bile respectively 3, 4, 5, 6, 7, 8, 9, 10. Mediates the efflux of endogenous compounds such as creatinine, vitamin B1/thiamine, agmatine and estrone-3-sulfate 11, 12, 13, 14, 15, 16, 17, 18. May also contribute to regulate the transport of cationic compounds in testis across the blood-testis-barrier (Probable).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Antiport, Transport
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene is located within the Smith-Magenis syndrome region on chromosome 17. It encodes a protein of unknown function. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC47A1-201
ENSP00000270570
ENST00000270570
Q96FL8
[Direct mapping] Multidrug and toxin extrusion protein 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0006812 [cation transport]
GO:0006855 [xenobiotic transmembrane transport]
GO:0015101 [organic cation transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015234 [thiamine transmembrane transporter activity]
GO:0015297 [antiporter activity]
GO:0015299 [solute:proton antiporter activity]
GO:0015489 [putrescine transmembrane transporter activity]
GO:0015695 [organic cation transport]
GO:0015847 [putrescine transport]
GO:0016020 [membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0031982 [vesicle]
GO:0042886 [amide transport]
GO:0042887 [amide transmembrane transporter activity]
GO:0042908 [xenobiotic transport]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0061459 [L-arginine transmembrane transporter activity]
GO:0071934 [thiamine transmembrane transport]
GO:0089718 [amino acid import across plasma membrane]
GO:0097638 [L-arginine import across plasma membrane]
GO:0098655 [cation transmembrane transport]
GO:1902475 [L-alpha-amino acid transmembrane transport]
GO:1902600 [proton transmembrane transport]
GO:1903826 [L-arginine transmembrane transport]
GO:1990961 [xenobiotic detoxification by transmembrane export across the plasma membrane]
Show all
570 aa
61.9 kDa
No >9
SLC47A1-202
ENSP00000378951
ENST00000395585
Q96FL8
[Direct mapping] Multidrug and toxin extrusion protein 1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005886 [plasma membrane]
GO:0015101 [organic cation transmembrane transporter activity]
GO:0015179 [L-amino acid transmembrane transporter activity]
GO:0015234 [thiamine transmembrane transporter activity]
GO:0015297 [antiporter activity]
GO:0015299 [solute:proton antiporter activity]
GO:0015489 [putrescine transmembrane transporter activity]
GO:0015695 [organic cation transport]
GO:0015847 [putrescine transport]
GO:0016020 [membrane]
GO:0016323 [basolateral plasma membrane]
GO:0016324 [apical plasma membrane]
GO:0022857 [transmembrane transporter activity]
GO:0042886 [amide transport]
GO:0042908 [xenobiotic transport]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0061459 [L-arginine transmembrane transporter activity]
GO:0071934 [thiamine transmembrane transport]
GO:0089718 [amino acid import across plasma membrane]
GO:0097638 [L-arginine import across plasma membrane]
GO:1902475 [L-alpha-amino acid transmembrane transport]
GO:1902600 [proton transmembrane transport]
GO:1903826 [L-arginine transmembrane transport]
GO:1990961 [xenobiotic detoxification by transmembrane export across the plasma membrane]
Show all
586 aa
63.5 kDa
No >9
SLC47A1-203
ENSP00000407155
ENST00000436810
E7EX57
[Direct mapping] Multidrug and toxin extrusion protein 1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0015297 [antiporter activity]
GO:0016020 [membrane]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:1990961 [xenobiotic detoxification by transmembrane export across the plasma membrane]
Show all
443 aa
48 kDa
No >9
SLC47A1-206
ENSP00000462630
ENST00000571335
J3KSS8
[Direct mapping] Multidrug and toxin extrusion protein 1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   6TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0015297 [antiporter activity]
GO:0016020 [membrane]
GO:0042908 [xenobiotic transport]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0055085 [transmembrane transport]
Show all
316 aa
34.3 kDa
No 6
SLC47A1-209
ENSP00000460164
ENST00000575023
I3L345
[Direct mapping] Multidrug and toxin extrusion protein 1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0015297 [antiporter activity]
GO:0016020 [membrane]
GO:0042908 [xenobiotic transport]
GO:0042910 [xenobiotic transmembrane transporter activity]
GO:0055085 [transmembrane transport]
Show all
268 aa
29.3 kDa
No 5
SLC47A1-213
ENSP00000462225
ENST00000581558
J3KRZ3
[Direct mapping] Multidrug and toxin extrusion protein 1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
99 aa
10.8 kDa
No 1

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