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  • PSMB6
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:96.8 nTPM
FANTOM5:110.5 Scaled Tags Per Million
Pig:77.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA023312
Glial cells Medium
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 96.8
Samples: 246

Max nTPM: 203.1
Min nTPM: 52.6
Std nTPM: 23.6
Median nTPM: 91.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 203.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 195.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 182.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 178.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 176.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 173.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 169.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 152.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 149.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 147.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 143.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 140.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 140.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 140.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 139.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 138.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 138.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 138.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 136.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 133.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 132.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 131.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 131.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 129.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 129.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 125.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 125.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 120.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 120.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 119.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 119.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 118.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 118.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 118.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 117.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 116.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 114.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 114.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 114.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 113.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 113.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 112.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 112.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 112.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 110.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 110.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 109.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 108.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 108.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 108.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 107.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 107.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 107.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 107.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 106.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 106.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 106.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 106.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 106.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 106.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 105.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 105.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 105.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 105.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 105.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 104.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 104.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 104.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 103.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 103.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 103.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 103.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 103.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 103.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 103.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 102.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 102.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 102.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 102.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 101.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 101.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 101.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 101.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 101.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 100.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 100.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 100.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 100.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 99.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 99.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 99.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 99.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 98.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 98.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 98.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 97.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 97.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 97.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 96.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 96.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 96.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 96.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 96.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 96.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 95.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 94.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 94.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 94.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 94.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 94.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 94.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 93.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 93.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 93.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 92.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 92.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 91.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 91.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 91.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 91.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 91.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 91.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 91.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 91.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 91.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 91.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 90.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 90.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 90.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 90.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 90.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 90.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 89.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 89.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 89.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 89.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 89.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 89.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 89.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 88.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 88.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 88.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 88.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 88.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 88.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 88.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 88.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 87.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 87.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 87.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 87.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 87.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 87.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 87.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 86.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 86.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 86.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 85.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 85.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 85.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 85.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 85.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 84.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 84.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 84.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 84.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 84.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 84.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 83.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 83.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 83.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 83.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 83.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 83.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 83.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 83.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 83.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 83.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 83.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 82.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 82.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 82.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 82.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 82.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 82.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 82.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 82.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 81.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 81.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 81.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 81.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 81.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 80.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 80.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 80.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 80.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 80.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 80.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 80.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 79.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 79.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 79.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 79.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 78.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 78.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 78.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 78.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 78.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 78.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 77.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 77.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 77.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 77.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 77.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 77.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 76.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 76.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 76.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 76.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 76.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 75.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 75.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 75.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 75.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 74.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 72.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 70.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 70.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 69.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 69.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 68.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 68.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 68.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 68.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 67.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 66.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 65.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 65.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 64.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 64.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 63.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 62.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 60.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 57.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 53.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 52.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

110.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 110.5
FF:10164-103B2 76 years, female 110.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.7
Pig sample Sample description nTPM
Caudate
nTPM: 77.7
Samples: 4

Max nTPM: 88.9
Min nTPM: 64.1
Sample A Female 73.6
Sample B Female 84.3
Sample C Male 88.9
Sample D Male 64.1

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