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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1096.6 nTPM
HPA Brain:555.8 nTPM
GTEx:1096.6 nTPM
FANTOM5:129.2 Scaled Tags Per Million
Pig:9.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

555.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 412.1
2565 Male, age 75, midline 581.7
1981 Female, age 72, midline 525.1
2048 Male, age 55, midline 343.4
2816 Male, age 47, midline 331.8
2194 Female, age 79, both hemispheres 278.6
Cervical spinal cord, dorsal horn
nTPM: 453.5
2173 Female, age 72, unknown 567.9
2069 Male, age 47, both hemispheres 545.1
2296 Male, age 66, both hemispheres 518.4
1877 Male, age 55, unknown 461.5
2721 Male, age 90, both hemispheres 324.9
2297 Male, age 75, both hemispheres 303.1
Cervical spinal cord, ventral horn
nTPM: 555.8
2480 Male, age 75, both hemispheres 808.9
2809 Male, age 90, both hemispheres 731.6
2098 Female, age 72, unknown 640.8
2068 Male, age 55, unknown 475.4
2295 Male, age 66, both hemispheres 411.1
2820 Female, age 79, both hemispheres 267.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1096.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1096.6
Samples: 159

Max nTPM: 1909.3
Min nTPM: 420.5
Std nTPM: 295.1
Median nTPM: 1069.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1909.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1890.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1861.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1847.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1752.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1730.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1727.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1708.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1699.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1658.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1645.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1638.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1593.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1548.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1541.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1540.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1484.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1465.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1464.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1457.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1454.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1450.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1445.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1444.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1403.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1389.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1372.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1371.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1370.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1328.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1324.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1319.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1317.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1289.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1282.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1281.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1275.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1272.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1240.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1235.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1226.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1223.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1223.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1217.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1216.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1210.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1205.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1201.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1200.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1199.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1193.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1189.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1186.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1180.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1180.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1171.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1169.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1168.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1166.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1161.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1156.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1155.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1154.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1140.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1129.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1121.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1120.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1110.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1110.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1110.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1107.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1093.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1091.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1088.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1086.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1085.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1083.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1076.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1072.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1069.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1065.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1055.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1053.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1050.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1047.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1046.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1044.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1020.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1016.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1015.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1009.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1006.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1005.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1001.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 996.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 993.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 986.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 981.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 981.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 979.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 959.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 953.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 946.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 943.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 942.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 923.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 920.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 915.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 906.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 904.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 900.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 900.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 896.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 891.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 889.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 886.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 878.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 874.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 870.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 868.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 863.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 863.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 858.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 858.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 854.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 851.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 846.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 841.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 835.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 834.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 834.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 829.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 822.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 819.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 816.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 814.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 803.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 796.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 795.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 782.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 779.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 778.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 775.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 774.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 772.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 771.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 745.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 739.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 725.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 714.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 706.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 698.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 692.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 668.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 655.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 599.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 572.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 518.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 420.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

129.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 129.2
FF:10181-103D1 60 years, female 136.6
FF:10159-103A6 76 years, female 121.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 9.8
Samples: 4

Max nTPM: 13.1
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 12.8
Sample C Male 13.1
Sample D Male 6.8
Ventral spinal cord
nTPM: 7.7
Samples: 4

Max nTPM: 8.9
Min nTPM: 6.2
Sample A Female 6.2
Sample B Female 8.9
Sample C Male 8.4
Sample D Male 7.1

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