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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:292.8 nTPM
HPA:292.8 nTPM
GTEx:159.4 nTPM
FANTOM5:304.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA077929
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

292.8
overview
Male, age 65
Small intestine sample 232
nTPM: 350.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 299.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 256.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 264

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 159.4
Samples: 187

Max nTPM: 526.3
Min nTPM: 23.8
Std nTPM: 106.1
Median nTPM: 121.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 526.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 488.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 457.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 408.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 408.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 405.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 402.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 389.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 388.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 384.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 373.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 372.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 369.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 366.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 365.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 348.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 339.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 334.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 332.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 325.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 311.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 308.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 304.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 301.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 295.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 293.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 291.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 291.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 283.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 272.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 266.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 265.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 262.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 256.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 255.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 251.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 245.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 245.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 244.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 241.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 239.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 237.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 234.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 223.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 223.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 217.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 216.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 214.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 208.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 203.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 202.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 201.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 200.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 195.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 193.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 189.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 183.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 180.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 179.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 179.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 178.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 176.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 176.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 173.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 169.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 169.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 168.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 165.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 161.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 161.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 158.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 156.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 156.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 153.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 151.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 151.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 149.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 149.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 147.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 144.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 144.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 143.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 140.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 140.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 139.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 137.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 133.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 129.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 129.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 127.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 123.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 123.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 121.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 121.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 120.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 118.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 118.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 117.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 117.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 116.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 116.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 114.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 114.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 113.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 111.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 111.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 110.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 110.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 107.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 105.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 104.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 104.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 104.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 101.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 101.3
GTEX-1192X-2526-SM-59868 50-59 years, male 101.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 101.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 100.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 96.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 96.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 95.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 94.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 94.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 93.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 92.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 91.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 90.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 90.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 89.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 88.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 88.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 87.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 85.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 85.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 84.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 83.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 82.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 82.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 79.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 79.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 78.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 77.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 76.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 76.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 72.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 72.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 72.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 72.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 72.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 71.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 71.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 69.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 68.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 68.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 68.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 66.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 66.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 66.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 64.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 63.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 61.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 60.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 60.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 60.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 59.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 58.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 58.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 57.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 57.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 55.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 54.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 53.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 49.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 49.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 48.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 48.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 46.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 44.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 44.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 44.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 44.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 42.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 40.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 38.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 33.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 29.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 23.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

304.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 304.2
FF:10024-101D6 15,40,85 years, mixed 304.2

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