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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:88.4 nTPM
HPA Brain:72.8 nTPM
GTEx:88.4 nTPM
FANTOM5:89.9 Scaled Tags Per Million
Pig:51.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 71.2
1981 Female, age 72, midline 90.0
2565 Male, age 75, midline 78.1
2048 Male, age 55, midline 73.1
2816 Male, age 47, midline 58.2
2194 Female, age 79, both hemispheres 56.5
Cervical spinal cord, dorsal horn
nTPM: 72.8
2173 Female, age 72, unknown 97.1
2069 Male, age 47, both hemispheres 80.0
2296 Male, age 66, both hemispheres 71.9
2721 Male, age 90, both hemispheres 67.9
1877 Male, age 55, unknown 65.2
2297 Male, age 75, both hemispheres 54.5
Cervical spinal cord, ventral horn
nTPM: 68.7
2098 Female, age 72, unknown 107.1
2809 Male, age 90, both hemispheres 76.7
2295 Male, age 66, both hemispheres 67.1
2480 Male, age 75, both hemispheres 60.5
2068 Male, age 55, unknown 57.2
2820 Female, age 79, both hemispheres 43.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 88.4
Samples: 159

Max nTPM: 161.1
Min nTPM: 54.2
Std nTPM: 17.5
Median nTPM: 85.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 161.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 139.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 131.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 130.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 127.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 127.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 123.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 120.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 118.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 116.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 116.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 114.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 114.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 113.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 112.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 111.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 109.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 109.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 109.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 109.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 108.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 106.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 106.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 106.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 106.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 106.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 105.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 105.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 104.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 104.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 103.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 103.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 102.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 102.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 102.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 101.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 100.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 100.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 99.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 97.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 97.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 97.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 96.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 96.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 96.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 95.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 95.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 95.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 95.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 94.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 94.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 94.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 93.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 93.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 93.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 91.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 91.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 91.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 91.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 91.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 90.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 90.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 89.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 89.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 89.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 89.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 89.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 88.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 88.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 88.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 87.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 87.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 87.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 87.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 86.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 86.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 86.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 86.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 85.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 85.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 85.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 84.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 84.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 84.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 84.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 84.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 84.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 84.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 84.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 83.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 82.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 82.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 82.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 81.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 81.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 81.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 81.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 81.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 81.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 80.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 80.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 80.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 80.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 79.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 79.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 79.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 79.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 78.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 78.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 78.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 77.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 77.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 77.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 77.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 77.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 77.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 77.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 76.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 76.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 75.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 75.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 75.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 75.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 75.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 75.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 74.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 74.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 74.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 73.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 72.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 72.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 72.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 72.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 71.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 71.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 71.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 70.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 70.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 69.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 69.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 69.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 69.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 69.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 68.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 68.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 67.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 67.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 66.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 65.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 65.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 64.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 63.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 63.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 62.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 62.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 60.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 59.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 56.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 54.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

89.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 89.9
FF:10181-103D1 60 years, female 100.3
FF:10159-103A6 76 years, female 79.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 49.3
Samples: 4

Max nTPM: 59.3
Min nTPM: 40.6
Sample A Female 40.6
Sample B Female 53.7
Sample C Male 59.3
Sample D Male 43.7
Ventral spinal cord
nTPM: 51.2
Samples: 4

Max nTPM: 54.3
Min nTPM: 44.6
Sample A Female 44.6
Sample B Female 54.0
Sample C Male 51.9
Sample D Male 54.3

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