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USP21
HPA
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  • USP21
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

USP21
Synonyms USP16, USP23
Gene descriptioni

Full gene name according to HGNC.

Ubiquitin specific peptidase 21
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q23.3
Chromosome location (bp) 161159450 - 161165723
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

6
Ensembl ENSG00000143258 (version 109)
Entrez gene 27005
HGNC HGNC:12620
UniProt Q9UK80 (UniProt - Evidence at protein level)
neXtProt NX_Q9UK80
GeneCards USP21
Antibodypedia USP21 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Deubiquitinates histone H2A, a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator (By similarity). Deubiquitination of histone H2A releaves the repression of di- and trimethylation of histone H3 at 'Lys-4', resulting in regulation of transcriptional initiation (By similarity). Regulates gene expression via histone H2A deubiquitination (By similarity). Deubiquitinates BAZ2A/TIP5 leading to its stabilization 1. Also capable of removing NEDD8 from NEDD8 conjugates but has no effect on Sentrin-1 conjugates 2. Also acts as a negative regulator of the ribosome quality control (RQC) by mediating deubiquitination of 40S ribosomal proteins RPS10/eS10 and RPS20/uS10, thereby antagonizing ZNF598-mediated 40S ubiquitination 3.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Activator, Chromatin regulator, Hydrolase, Protease, Thiol protease
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Transcription, Transcription regulation, Ubl conjugation pathway
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the C19 peptidase family, also known as family 2 of ubiquitin carboxy-terminal hydrolases. The encoded protein cleaves ubiquitin from ubiquitinated proteins for recycling in intracellular protein degradation. The encoded protein is also able to release NEDD8, a ubiquitin-like protein, from NEDD8-conjugated proteins. This gene has been referred to as USP16 and USP23 but is now known as USP21. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
USP21-201
ENSP00000289865
ENST00000289865
Q9UK80
[Direct mapping] Ubiquitin carboxyl-terminal hydrolase 21
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003713 [transcription coactivator activity]
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006325 [chromatin organization]
GO:0006508 [proteolysis]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0016578 [histone deubiquitination]
GO:0016579 [protein deubiquitination]
GO:0016787 [hydrolase activity]
GO:0019784 [deNEDDylase activity]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
Show all
565 aa
62.7 kDa
No 0
USP21-202
ENSP00000356980
ENST00000368001
Q9UK80
[Direct mapping] Ubiquitin carboxyl-terminal hydrolase 21
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003713 [transcription coactivator activity]
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006325 [chromatin organization]
GO:0006508 [proteolysis]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0016578 [histone deubiquitination]
GO:0016579 [protein deubiquitination]
GO:0016787 [hydrolase activity]
GO:0019784 [deNEDDylase activity]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
Show all
551 aa
61.1 kDa
No 0
USP21-203
ENSP00000356981
ENST00000368002
Q9UK80
[Direct mapping] Ubiquitin carboxyl-terminal hydrolase 21
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Cysteine-type peptidases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003713 [transcription coactivator activity]
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006325 [chromatin organization]
GO:0006508 [proteolysis]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0008233 [peptidase activity]
GO:0008234 [cysteine-type peptidase activity]
GO:0016578 [histone deubiquitination]
GO:0016579 [protein deubiquitination]
GO:0016787 [hydrolase activity]
GO:0019784 [deNEDDylase activity]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0046872 [metal ion binding]
Show all
565 aa
62.7 kDa
No 0
USP21-204
ENSP00000476830
ENST00000479344
V9GYJ6
[Direct mapping] Ubiquitin carboxyl-terminal hydrolase 21
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
117 aa
12.6 kDa
No 0
USP21-209
ENSP00000476344
ENST00000492950
V9GY36
[Direct mapping] Ubiquitin carboxyl-terminal hydrolase 21
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0016579 [protein deubiquitination]
Show all
253 aa
27.4 kDa
No 0
USP21-211
ENSP00000512748
ENST00000696603
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Show all
GO:0004843 [cysteine-type deubiquitinase activity]
GO:0006511 [ubiquitin-dependent protein catabolic process]
GO:0016579 [protein deubiquitination]
Show all
412 aa
46.2 kDa
No 0

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