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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:349.2 nTPM
GTEx:349.2 nTPM
FANTOM5:35.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA027241Antibody HPA076029
Squamous epithelial cells MediumHigh




VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 349.2
Samples: 156

Max nTPM: 1836.3
Min nTPM: 7.0
Std nTPM: 453.3
Median nTPM: 131.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1836.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1806.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 1753.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1733.0
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1686.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1522.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1482.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1415.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1390.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1257.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1217.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1215.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1076.8
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1069.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1058.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1058.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1028.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 987.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 979.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 952.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 948.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 945.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 875.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 871.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 861.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 859.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 857.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 808.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 778.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 759.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 669.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 649.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 644.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 600.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 590.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 556.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 556.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 529.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 524.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 524.3
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 499.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 494.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 448.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 445.2
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 416.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 372.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 358.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 333.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 328.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 320.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 320.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 314.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 311.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 310.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 302.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 286.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 257.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 252.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 239.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 234.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 232.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 227.6
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 227.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 215.0
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 213.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 206.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 197.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 174.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 170.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 162.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 157.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 156.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 152.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 150.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 146.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 143.6
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 137.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 135.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 127.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 117.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 116.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 111.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 109.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 99.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 92.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 89.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 88.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 85.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 84.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 79.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 71.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 68.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 68.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 67.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 66.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 62.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 61.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 61.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 60.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 56.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 54.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 54.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 53.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 49.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 46.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 46.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 45.8
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 45.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 45.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 45.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 43.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 42.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 42.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 41.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 38.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 37.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 37.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 35.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 35.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 34.6
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 34.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 31.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 30.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 28.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 28.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 27.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 27.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 27.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 26.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 26.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 26.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 26.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 25.0
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 24.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 24.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 23.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 22.9
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 22.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 22.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 21.1
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 20.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 19.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 18.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 18.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 17.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 16.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 15.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 15.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 14.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 13.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 13.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 12.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 12.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 8.3
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 7.3
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 7.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

35.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 35.9
FF:10204-103F6 68 years, female 35.9

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