MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.7 nTPM
HPA Brain:77.9 nTPM
GTEx:68.7 nTPM
FANTOM5:132.0 Scaled Tags Per Million
Pig:58.6 nTPM
Mouse:42.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 77.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.4
2828 Female, age 72, unknown 94.2
2586 Male, age 75, left hemisphere 90.3
1870 Female, age 42, unknown 68.4
2666 Male, age 74, left hemisphere 68.4
1827 Male, age 72, unknown 64.1
2411 Female, age 72, unknown 61.4
1833 Male, age 53, unknown 61.3
1830 Male, age 51, unknown 61.1
2019 Male, age 18, unknown 53.0
2219 Male, age 76, both hemispheres 41.8
Dorsal raphe nucleus
nTPM: 73.6
2298 Female, age 72, unknown 92.7
1828 Male, age 53, unknown 75.1
2016 Female, age 72, unknown 69.6
2047 Male, age 72, unknown 68.2
2750 Male, age 76, both hemispheres 62.3
Inferior colliculus
nTPM: 69.8
1890 Male, age 53, unknown 73.7
2849 Male, age 72, unknown 68.9
1848 Female, age 42, unknown 68.8
2097 Female, age 72, unknown 67.9
Median raphe nucleus
nTPM: 50.4
2220 Male, age 76, midline 50.4
Periaquaductal grey, anterior
nTPM: 73.9
2502 Female, age 75, unknown 78.0
1795 Male, age 51, unknown 75.4
1947 Male, age 18, unknown 68.2
Periaquaductal grey, dorsal
nTPM: 65.9
2850 Male, age 76, both hemispheres 79.4
1840 Male, age 53, unknown 63.7
2464 Female, age 72, unknown 60.6
1831 Male, age 72, unknown 59.9
Periaquaductal grey, lateral
nTPM: 69.9
2140 Male, age 76, both hemispheres 79.4
2053 Male, age 18, unknown 67.2
2272 Male, age 74, both hemispheres 63.2
Pretectal area
nTPM: 61.8
2316 Male, age 76, right hemisphere 69.9
2825 Male, age 18, unknown 69.2
2224 Female, age 72, unknown 65.5
1817 Female, age 42, unknown 63.9
2007 Male, age 72, unknown 63.9
2667 Female, age 75, unknown 63.8
1816 Male, age 51, unknown 60.3
1944 Female, age 72, unknown 58.0
1815 Male, age 53, unknown 57.4
2273 Male, age 74, both hemispheres 54.5
2407 Male, age 75, both hemispheres 53.5
Red nucleus
nTPM: 77.9
2227 Male, age 72, unknown 88.3
2769 Male, age 72, unknown 87.0
2503 Female, age 72, unknown 83.9
1865 Male, age 51, unknown 82.9
2725 Female, age 75, unknown 82.5
1821 Female, age 72, unknown 82.4
1954 Female, age 42, unknown 81.1
1904 Male, age 53, unknown 77.1
2588 Male, age 74, left hemisphere 72.7
2823 Male, age 76, right hemisphere 69.7
2785 Male, age 18, unknown 69.4
2584 Male, age 75, left hemisphere 58.1
Substantia nigra
nTPM: 66.0
2699 Male, age 18, unknown 88.8
1916 Female, age 42, unknown 79.9
2665 Male, age 74, both hemispheres 71.4
1851 Male, age 51, unknown 69.0
1889 Female, age 72, unknown 64.9
2583 Male, age 75, right hemisphere 64.6
2590 Female, age 75, unknown 63.9
2241 Male, age 72, unknown 57.4
1941 Male, age 53, unknown 51.6
2409 Female, age 72, unknown 48.6
Superior colliculus
nTPM: 64.1
1796 Male, age 53, unknown 82.9
2087 Female, age 72, unknown 67.3
2664 Male, age 75, both hemispheres 66.4
1995 Male, age 72, unknown 64.7
2587 Male, age 74, left hemisphere 63.7
2261 Male, age 18, unknown 63.4
1913 Female, age 42, unknown 63.2
1839 Male, age 51, unknown 58.8
2668 Female, age 75, unknown 55.4
1895 Male, age 76, right hemisphere 54.6
Ventral tegmental area
nTPM: 68.3
1915 Female, age 42, unknown 74.9
2021 Male, age 53, unknown 70.8
2223 Female, age 72, unknown 69.5
1942 Male, age 51, unknown 68.6
2218 Male, age 76, both hemispheres 67.6
2410 Female, age 72, unknown 58.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 68.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.7
Samples: 139

Max nTPM: 196.5
Min nTPM: 15.8
Std nTPM: 30.9
Median nTPM: 60.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 196.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 173.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 152.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 136.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 130.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 128.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 124.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 123.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 123.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 121.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 120.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 132.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.0
FF:10158-103A5 76 years, female 132.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.2
Samples: 4

Max nTPM: 72.5
Min nTPM: 48.9
Sample A Female 60.3
Sample B Female 72.5
Sample C Male 51.2
Sample D Male 48.9
Midbrain
nTPM: 53.3
Samples: 4

Max nTPM: 60.2
Min nTPM: 43.4
Sample A Female 60.2
Sample B Female 59.0
Sample C Male 50.6
Sample D Male 43.4
Periaqueductal gray
nTPM: 53.4
Samples: 3

Max nTPM: 61.1
Min nTPM: 45.7
Sample B Female 53.4
Sample C Male 61.1
Sample D Male 45.7
Superior colliculi
nTPM: 58.6
Samples: 4

Max nTPM: 76.4
Min nTPM: 48.8
Sample A Female 58.7
Sample B Female 76.4
Sample C Male 50.3
Sample D Male 48.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 43.9
Min nTPM: 41.1
Sample A Male 42.0
Sample B Male 43.9
Sample C Female 42.4
Sample D Female 41.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
112647104 Antisense, RP_110421_01_A10, Mouse strain C57BL/6J (56 days, male) 1.3
68203510 Antisense, RP_041208_01_E06, Mouse strain C57BL/6J (56 days, male) 0.2

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