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SUSD4
HPA
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  • SUSD4
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SUSD4
Synonyms FLJ10052
Gene descriptioni

Full gene name according to HGNC.

Sushi domain containing 4
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q41
Chromosome location (bp) 223220819 - 223364233
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000143502 (version 109)
Entrez gene 55061
HGNC HGNC:25470
UniProt Q5VX71 (UniProt - Evidence at protein level)
neXtProt NX_Q5VX71
GeneCards SUSD4
Antibodypedia SUSD4 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Acts as a complement inhibitor by disrupting the formation of the classical C3 convertase. Isoform 3 inhibits the classical complement pathway, while membrane-bound isoform 1 inhibits deposition of C3b via both the classical and alternative complement pathways.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Complement pathway, Immunity, Innate immunity
Gene summary (Entrez)i

Useful information about the gene from Entrez

Involved in negative regulation of complement activation, alternative pathway and negative regulation of complement activation, classical pathway. Predicted to be located in extracellular region. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SUSD4-202
ENSP00000344219
ENST00000343846
Q5VX71
[Direct mapping] Sushi domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0002376 [immune system process]
GO:0005576 [extracellular region]
GO:0006958 [complement activation, classical pathway]
GO:0016020 [membrane]
GO:0030449 [regulation of complement activation]
GO:0045087 [innate immune response]
GO:0045957 [negative regulation of complement activation, alternative pathway]
GO:0045959 [negative regulation of complement activation, classical pathway]
Show all
490 aa
53.8 kDa
No 1
SUSD4-203
ENSP00000339926
ENST00000344029
Q5VX71
[Direct mapping] Sushi domain-containing protein 4
Show all
A0A140VK55
[Target identity:100%; Query identity:100%] Testicular secretory protein Li 55
Show all
   THUMBUP predicted membrane proteins
   SignalP predicted secreted proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0002376 [immune system process]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0006958 [complement activation, classical pathway]
GO:0016020 [membrane]
GO:0030449 [regulation of complement activation]
GO:0045087 [innate immune response]
GO:0045957 [negative regulation of complement activation, alternative pathway]
GO:0045959 [negative regulation of complement activation, classical pathway]
Show all
290 aa
32.2 kDa
No 0
SUSD4-204
ENSP00000355843
ENST00000366878
Q5VX71
[Direct mapping] Sushi domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0002376 [immune system process]
GO:0005576 [extracellular region]
GO:0006958 [complement activation, classical pathway]
GO:0016020 [membrane]
GO:0030449 [regulation of complement activation]
GO:0045087 [innate immune response]
GO:0045957 [negative regulation of complement activation, alternative pathway]
GO:0045959 [negative regulation of complement activation, classical pathway]
Show all
490 aa
53.8 kDa
No 1
SUSD4-207
ENSP00000477374
ENST00000484758
B7Z369
[Direct mapping] Sushi domain-containing protein 4; cDNA FLJ54683, highly similar to Homo sapiens sushi domain containing 4 (SUSD4), transcript variant 1, mRNA
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0030449 [regulation of complement activation]
Show all
421 aa
46.3 kDa
No 1
SUSD4-208
ENSP00000476954
ENST00000494793
V9GYN8
[Direct mapping] Sushi domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0030449 [regulation of complement activation]
Show all
488 aa
53.7 kDa
No 1
SUSD4-210
ENSP00000477432
ENST00000608996
V9GZ49
[Direct mapping] Sushi domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0030449 [regulation of complement activation]
Show all
463 aa
50.5 kDa
Yes 1
SUSD4-213
ENSP00000504955
ENST00000680429
A0A7P0T864
[Direct mapping] Sushi domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0030449 [regulation of complement activation]
Show all
529 aa
58.1 kDa
No 1
SUSD4-214
ENSP00000505301
ENST00000681285
A0A7P0Z457
[Direct mapping] Sushi domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0030449 [regulation of complement activation]
Show all
562 aa
61.7 kDa
No 1
SUSD4-215
ENSP00000505262
ENST00000681305
Q5VX71
[Direct mapping] Sushi domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0002376 [immune system process]
GO:0005576 [extracellular region]
GO:0006958 [complement activation, classical pathway]
GO:0016020 [membrane]
GO:0030449 [regulation of complement activation]
GO:0045087 [innate immune response]
GO:0045957 [negative regulation of complement activation, alternative pathway]
GO:0045959 [negative regulation of complement activation, classical pathway]
Show all
490 aa
53.8 kDa
No 1
SUSD4-217
ENSP00000505495
ENST00000681669
Q5VX71
[Direct mapping] Sushi domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0002376 [immune system process]
GO:0005576 [extracellular region]
GO:0006958 [complement activation, classical pathway]
GO:0016020 [membrane]
GO:0030449 [regulation of complement activation]
GO:0045087 [innate immune response]
GO:0045957 [negative regulation of complement activation, alternative pathway]
GO:0045959 [negative regulation of complement activation, classical pathway]
Show all
490 aa
53.8 kDa
No 1

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