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SLC39A1
HPA
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  • SLC39A1
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC39A1
Synonyms ZIP1, ZIRTL
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 39 member 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q21.3
Chromosome location (bp) 153959099 - 153968184
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000143570 (version 109)
Entrez gene 27173
HGNC HGNC:12876
UniProt Q9NY26 (UniProt - Evidence at protein level)
neXtProt NX_Q9NY26
GeneCards SLC39A1
Antibodypedia SLC39A1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Transporter for the divalent cation Zn(2+). Mediates the influx of Zn(2+) into cells from extracellular space 1, 2, 3. Functions as the major importer of zinc from circulating blood plasma into prostate cells 4.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ion transport, Transport, Zinc transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the zinc-iron permease family. The encoded protein is localized to the cell membrane and acts as a zinc uptake transporter. This gene has been linked to prostate cancer, breast cancer, and Alzheimer's disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2012]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC39A1-201
ENSP00000309710
ENST00000310483
Q9NY26
[Direct mapping] Zinc transporter ZIP1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005385 [zinc ion transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0006829 [zinc ion transport]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0046873 [metal ion transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071577 [zinc ion transmembrane transport]
Show all
324 aa
34.2 kDa
No 8
SLC39A1-202
ENSP00000348535
ENST00000356205
Q9NY26
[Direct mapping] Zinc transporter ZIP1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001701 [in utero embryonic development]
GO:0005102 [signaling receptor binding]
GO:0005385 [zinc ion transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0006829 [zinc ion transport]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0046873 [metal ion transmembrane transporter activity]
GO:0048701 [embryonic cranial skeleton morphogenesis]
GO:0055085 [transmembrane transport]
GO:0060173 [limb development]
GO:0071577 [zinc ion transmembrane transport]
Show all
324 aa
34.2 kDa
No 8
SLC39A1-203
ENSP00000357610
ENST00000368621
Q9NY26
[Direct mapping] Zinc transporter ZIP1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005385 [zinc ion transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0006829 [zinc ion transport]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0046873 [metal ion transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071577 [zinc ion transmembrane transport]
Show all
324 aa
34.2 kDa
No 8
SLC39A1-204
ENSP00000357612
ENST00000368623
Q9NY26
[Direct mapping] Zinc transporter ZIP1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005385 [zinc ion transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0006829 [zinc ion transport]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0046873 [metal ion transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071577 [zinc ion transmembrane transport]
Show all
324 aa
34.2 kDa
No 8
SLC39A1-205
ENSP00000392229
ENST00000413622
Q5T4K4
[Direct mapping] Zinc transporter ZIP1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0030001 [metal ion transport]
GO:0046873 [metal ion transmembrane transporter activity]
GO:0055085 [transmembrane transport]
Show all
240 aa
25.5 kDa
No 4
SLC39A1-206
ENSP00000407717
ENST00000417348
Q5T4K2
[Direct mapping] Zinc transporter ZIP1
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0030001 [metal ion transport]
GO:0046873 [metal ion transmembrane transporter activity]
GO:0055085 [transmembrane transport]
Show all
206 aa
21.8 kDa
No 3
SLC39A1-208
ENSP00000443632
ENST00000537590
A0A0A0MTL8
[Direct mapping] Zinc transporter ZIP1
Show all
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
116 aa
11.8 kDa
No 0
SLC39A1-209
ENSP00000479421
ENST00000617697
Q9NY26
[Direct mapping] Zinc transporter ZIP1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005385 [zinc ion transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0006829 [zinc ion transport]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0046873 [metal ion transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071577 [zinc ion transmembrane transport]
Show all
324 aa
34.2 kDa
No 8
SLC39A1-210
ENSP00000484182
ENST00000621013
Q9NY26
[Direct mapping] Zinc transporter ZIP1
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005385 [zinc ion transmembrane transporter activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0006829 [zinc ion transport]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0046873 [metal ion transmembrane transporter activity]
GO:0055085 [transmembrane transport]
GO:0071577 [zinc ion transmembrane transport]
Show all
324 aa
34.2 kDa
No 8

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