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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:128.9 nTPM
HPA Brain:82.3 nTPM
GTEx:128.9 nTPM
FANTOM5:216.5 Scaled Tags Per Million
Pig:71.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 66.9
1981 Female, age 72, midline 91.0
2816 Male, age 47, midline 71.5
2048 Male, age 55, midline 64.0
2565 Male, age 75, midline 59.8
2194 Female, age 79, both hemispheres 48.2
Cervical spinal cord, dorsal horn
nTPM: 82.3
2296 Male, age 66, both hemispheres 176.7
2173 Female, age 72, unknown 109.8
2069 Male, age 47, both hemispheres 81.5
1877 Male, age 55, unknown 57.1
2297 Male, age 75, both hemispheres 34.7
2721 Male, age 90, both hemispheres 33.9
Cervical spinal cord, ventral horn
nTPM: 68.6
2098 Female, age 72, unknown 114.1
2480 Male, age 75, both hemispheres 70.7
2809 Male, age 90, both hemispheres 62.5
2068 Male, age 55, unknown 60.5
2295 Male, age 66, both hemispheres 56.4
2820 Female, age 79, both hemispheres 47.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 128.9
Samples: 159

Max nTPM: 242.9
Min nTPM: 41.0
Std nTPM: 43.5
Median nTPM: 122.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 242.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 240.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 236.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 230.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 228.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 225.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 215.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 207.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 203.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 201.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 200.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 199.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 195.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 192.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 188.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 187.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 186.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 185.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 182.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 179.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 178.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 178.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 177.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 176.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 175.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 175.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 172.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 172.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 171.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 168.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 166.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 165.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 163.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 160.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 158.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 156.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 156.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 155.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 155.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 154.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 154.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 154.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 154.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 154.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 153.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 152.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 152.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 151.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 150.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 150.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 150.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 150.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 149.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 144.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 144.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 142.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 142.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 141.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 139.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 139.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 136.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 135.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 135.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 135.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 134.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 133.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 132.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 131.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 130.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 129.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 128.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 128.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 127.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 126.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 125.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 125.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 124.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 124.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 122.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 122.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 122.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 121.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 121.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 120.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 120.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 120.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 119.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 119.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 118.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 118.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 118.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 117.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 116.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 115.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 114.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 114.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 113.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 113.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 113.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 112.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 112.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 111.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 111.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 110.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 110.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 109.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 108.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 107.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 107.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 107.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 107.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 106.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 106.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 105.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 105.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 105.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 103.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 102.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 102.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 99.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 98.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 96.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 95.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 95.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 94.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 93.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 92.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 92.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 92.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 90.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 89.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 85.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 84.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 84.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 84.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 83.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 78.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 77.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 76.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 70.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 70.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 69.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 68.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 68.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 66.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 66.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 65.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 64.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 63.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 63.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 59.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 58.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 56.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 54.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 52.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 52.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 44.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 41.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

216.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 216.5
FF:10181-103D1 60 years, female 230.7
FF:10159-103A6 76 years, female 202.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 67.7
Samples: 4

Max nTPM: 72.2
Min nTPM: 63.9
Sample A Female 72.2
Sample B Female 63.9
Sample C Male 69.9
Sample D Male 64.7
Ventral spinal cord
nTPM: 71.7
Samples: 4

Max nTPM: 74.0
Min nTPM: 68.1
Sample A Female 74.0
Sample B Female 72.0
Sample C Male 72.7
Sample D Male 68.1

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