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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:223.4 nTPM
HPA Brain:196.7 nTPM
GTEx:223.4 nTPM
FANTOM5:111.3 Scaled Tags Per Million
Pig:95.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 186.9
1981 Female, age 72, midline 262.2
2048 Male, age 55, midline 227.0
2565 Male, age 75, midline 150.2
2816 Male, age 47, midline 148.9
2194 Female, age 79, both hemispheres 146.1
Cervical spinal cord, dorsal horn
nTPM: 196.7
2173 Female, age 72, unknown 255.9
2296 Male, age 66, both hemispheres 223.2
2069 Male, age 47, both hemispheres 210.5
1877 Male, age 55, unknown 179.9
2721 Male, age 90, both hemispheres 164.9
2297 Male, age 75, both hemispheres 145.8
Cervical spinal cord, ventral horn
nTPM: 192.7
2098 Female, age 72, unknown 295.3
2295 Male, age 66, both hemispheres 207.8
2480 Male, age 75, both hemispheres 202.6
2809 Male, age 90, both hemispheres 188.2
2068 Male, age 55, unknown 142.4
2820 Female, age 79, both hemispheres 120.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 223.4
Samples: 159

Max nTPM: 366.0
Min nTPM: 134.5
Std nTPM: 45.6
Median nTPM: 220.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 366.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 358.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 352.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 347.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 329.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 312.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 309.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 305.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 303.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 298.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 292.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 289.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 289.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 283.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 281.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 280.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 277.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 276.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 276.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 275.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 273.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 273.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 271.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 270.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 269.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 269.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 269.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 268.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 268.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 266.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 266.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 264.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 262.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 261.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 260.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 260.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 259.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 258.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 255.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 254.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 253.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 252.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 251.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 246.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 246.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 245.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 244.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 243.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 241.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 239.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 238.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 238.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 237.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 237.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 236.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 235.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 235.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 234.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 233.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 233.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 232.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 232.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 231.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 230.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 229.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 229.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 227.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 225.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 225.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 225.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 224.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 224.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 223.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 223.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 223.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 222.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 222.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 222.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 221.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 220.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 219.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 218.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 215.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 214.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 214.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 214.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 214.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 211.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 211.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 209.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 209.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 207.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 205.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 205.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 204.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 204.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 203.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 203.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 202.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 202.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 202.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 201.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 201.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 201.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 200.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 200.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 199.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 199.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 199.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 199.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 198.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 198.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 198.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 197.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 197.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 194.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 193.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 192.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 192.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 192.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 190.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 187.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 185.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 185.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 185.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 185.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 184.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 182.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 182.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 181.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 177.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 176.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 175.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 174.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 173.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 173.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 172.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 171.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 170.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 169.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 168.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 168.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 168.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 168.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 167.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 166.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 166.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 166.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 165.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 164.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 164.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 164.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 157.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 156.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 151.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 147.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 145.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 138.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 134.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

111.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 111.3
FF:10159-103A6 76 years, female 118.2
FF:10181-103D1 60 years, female 104.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 84.7
Samples: 4

Max nTPM: 93.3
Min nTPM: 72.0
Sample A Female 82.8
Sample B Female 90.5
Sample C Male 72.0
Sample D Male 93.3
Ventral spinal cord
nTPM: 95.0
Samples: 4

Max nTPM: 101.1
Min nTPM: 89.3
Sample A Female 89.4
Sample B Female 100.1
Sample C Male 89.3
Sample D Male 101.1

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