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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:469.8 nTPM
HPA Brain:132.2 nTPM
GTEx:469.8 nTPM
FANTOM5:338.0 Scaled Tags Per Million
Pig:86.0 nTPM
Mouse:191.6 nTPM
Allen mouse:10.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

132.2
Sample id Sample description nTPM
Amygdala
nTPM: 120.4
2517 Female, age 94, left hemisphere 142.0
2695 Female, age 67, right hemisphere 128.4
2514 Male, age 75, right hemisphere 120.5
1987 Female, age 91, left hemisphere 108.4
2814 Male, age 76, right hemisphere 103.0
Basal amygdala
nTPM: 127.5
2243 Female, age 91, right hemisphere 145.4
2827 Female, age 67, right hemisphere 142.2
2609 Male, age 75, right hemisphere 133.7
2110 Male, age 80, left hemisphere 132.6
2685 Female, age 94, left hemisphere 118.2
1955 Male, age 76, both hemispheres 93.2
Central amygdala
nTPM: 118.2
2826 Female, age 94, left hemisphere 176.2
2515 Male, age 75, right hemisphere 133.0
2239 Male, age 80, left hemisphere 107.3
1905 Male, age 76, both hemispheres 96.8
2701 Female, age 91, right hemisphere 77.9
Corticomedial amygdala
nTPM: 121.9
2535 Female, age 67, right hemisphere 149.1
2829 Male, age 80, left hemisphere 137.4
2429 Female, age 94, left hemisphere 131.4
2428 Male, age 75, right hemisphere 127.4
2242 Female, age 91, right hemisphere 113.3
2240 Male, age 76, both hemispheres 72.7
Lateral amygdala
nTPM: 132.2
2830 Female, age 67, right hemisphere 177.8
2534 Female, age 94, left hemisphere 169.6
2516 Male, age 75, right hemisphere 147.7
2255 Female, age 91, right hemisphere 108.0
1883 Male, age 76, both hemispheres 96.8
2256 Male, age 80, left hemisphere 93.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

469.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 469.8
Samples: 152

Max nTPM: 2042.9
Min nTPM: 129.7
Std nTPM: 226.6
Median nTPM: 420.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2042.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1123.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1102.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1031.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1016.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 914.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 877.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 837.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 824.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 817.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 788.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 757.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 729.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 727.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 720.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 716.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 697.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 694.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 682.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 682.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 650.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 640.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 627.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 625.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 618.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 609.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 609.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 608.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 606.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 605.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 588.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 585.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 581.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 578.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 567.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 560.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 557.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 556.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 554.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 549.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 547.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 546.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 546.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 546.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 541.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 537.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 533.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 531.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 527.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 521.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 520.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 519.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 515.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 512.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 511.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 508.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 504.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 502.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 502.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 496.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 492.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 489.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 472.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 468.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 464.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 464.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 463.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 457.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 443.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 442.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 442.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 437.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 435.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 425.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 423.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 422.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 418.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 414.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 411.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 410.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 410.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 404.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 403.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 400.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 397.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 397.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 396.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 394.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 392.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 385.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 378.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 378.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 377.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 373.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 372.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 370.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 369.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 362.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 355.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 347.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 346.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 343.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 340.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 339.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 337.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 337.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 335.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 334.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 334.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 332.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 330.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 326.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 324.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 324.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 323.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 323.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 319.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 315.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 315.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 309.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 308.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 305.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 298.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 288.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 287.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 287.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 286.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 284.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 283.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 282.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 278.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 278.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 274.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 273.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 272.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 269.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 268.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 260.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 258.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 252.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 251.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 241.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 233.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 230.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 227.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 226.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 210.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 204.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 196.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 187.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 174.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 129.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

338.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 338.0
FF:10151-102I7 76 years, female 338.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.0
Pig sample Sample description nTPM
Amygdala
nTPM: 86.0
Samples: 4

Max nTPM: 118.4
Min nTPM: 67.5
Sample A Female 118.4
Sample B Female 78.0
Sample C Male 80.2
Sample D Male 67.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 191.6
Samples: 4

Max nTPM: 208.1
Min nTPM: 171.8
Sample A Male 171.8
Sample B Male 201.0
Sample C Female 208.1
Sample D Female 185.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.2
68443298 Antisense, RP_050111_01_G03, Mouse strain C57BL/6J (56 days, male) 15.1
2280 Antisense, RP_Baylor_102835, Mouse strain C57BL/6J (56 days, male) 5.3
2279 Antisense, RP_Baylor_102835, Mouse strain C57BL/6J (56 days, male) 1.3

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