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  • GUK1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:282.0 nTPM
FANTOM5:310.9 Scaled Tags Per Million
Pig:112.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA048587
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

282.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 282.0
Samples: 246

Max nTPM: 896.9
Min nTPM: 102.7
Std nTPM: 100.8
Median nTPM: 269.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 896.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 735.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 634.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 632.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 544.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 536.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 518.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 504.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 500.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 488.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 477.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 444.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 441.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 435.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 429.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 429.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 425.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 420.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 416.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 416.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 410.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 408.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 408.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 405.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 393.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 392.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 389.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 388.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 385.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 377.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 377.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 371.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 367.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 365.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 361.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 360.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 359.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 358.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 354.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 354.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 353.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 352.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 352.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 350.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 350.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 350.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 346.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 343.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 342.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 341.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 340.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 339.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 337.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 337.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 337.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 336.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 336.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 331.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 329.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 329.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 329.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 328.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 328.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 326.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 322.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 322.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 319.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 318.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 315.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 313.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 311.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 311.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 310.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 310.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 309.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 306.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 305.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 303.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 303.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 302.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 302.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 300.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 299.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 299.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 298.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 298.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 298.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 297.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 297.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 296.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 296.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 295.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 294.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 293.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 292.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 288.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 287.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 286.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 285.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 285.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 284.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 284.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 284.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 283.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 280.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 280.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 280.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 279.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 279.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 278.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 278.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 277.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 277.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 276.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 276.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 276.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 275.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 275.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 273.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 271.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 271.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 270.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 269.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 269.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 269.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 267.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 266.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 266.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 265.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 265.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 264.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 264.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 264.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 264.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 263.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 262.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 261.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 259.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 256.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 256.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 254.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 254.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 253.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 252.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 252.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 251.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 250.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 250.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 250.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 249.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 248.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 248.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 245.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 244.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 244.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 242.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 242.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 242.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 242.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 240.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 240.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 239.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 239.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 238.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 238.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 235.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 235.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 234.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 232.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 231.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 231.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 228.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 228.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 226.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 226.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 223.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 223.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 220.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 218.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 217.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 216.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 215.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 214.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 214.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 214.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 214.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 214.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 213.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 212.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 211.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 211.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 210.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 210.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 210.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 210.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 210.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 209.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 209.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 209.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 205.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 204.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 201.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 198.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 197.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 196.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 194.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 194.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 193.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 192.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 191.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 191.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 190.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 189.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 187.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 186.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 185.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 185.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 184.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 183.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 181.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 181.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 180.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 178.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 176.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 173.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 172.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 170.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 167.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 166.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 165.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 165.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 161.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 160.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 158.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 157.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 145.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 144.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 139.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 137.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 129.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 125.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 122.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 110.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 107.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 104.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 102.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

310.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 310.9
FF:10164-103B2 76 years, female 310.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.3
Pig sample Sample description nTPM
Caudate
nTPM: 112.4
Samples: 4

Max nTPM: 143.0
Min nTPM: 93.4
Sample A Female 93.4
Sample B Female 118.6
Sample C Male 143.0
Sample D Male 94.4

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