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PSEN2
HPA
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  • PSEN2
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PSEN2
Synonyms AD3L, AD4, PS2, STM2
Gene descriptioni

Full gene name according to HGNC.

Presenilin 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q42.13
Chromosome location (bp) 226870184 - 226927726
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

14
Ensembl ENSG00000143801 (version 109)
Entrez gene 5664
HGNC HGNC:9509
UniProt P49810 (UniProt - Evidence at protein level)
neXtProt NX_P49810
GeneCards PSEN2
Antibodypedia PSEN2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Probable catalytic subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors and APP (amyloid-beta precursor protein). Requires the other members of the gamma-secretase complex to have a protease activity. May play a role in intracellular signaling and gene expression or in linking chromatin to the nuclear membrane. May function in the cytoplasmic partitioning of proteins. The holoprotein functions as a calcium-leak channel that allows the passive movement of calcium from endoplasmic reticulum to cytosol and is involved in calcium homeostasis 1. Is a regulator of mitochondrion-endoplasmic reticulum membrane tethering and modulates calcium ions shuttling between ER and mitochondria 2.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase, Protease
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Notch signaling pathway
Gene summary (Entrez)i

Useful information about the gene from Entrez

Alzheimer's disease (AD) patients with an inherited form of the disease carry mutations in the presenilin proteins (PSEN1 or PSEN2) or the amyloid precursor protein (APP). These disease-linked mutations result in increased production of the longer form of amyloid-beta (main component of amyloid deposits found in AD brains). Presenilins are postulated to regulate APP processing through their effects on gamma-secretase, an enzyme that cleaves APP. Also, it is thought that the presenilins are involved in the cleavage of the Notch receptor such that, they either directly regulate gamma-secretase activity, or themselves act are protease enzymes. Two alternatively spliced transcript variants encoding different isoforms of PSEN2 have been identified. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PSEN2-201
ENSP00000355746
ENST00000366782
P49810
[Direct mapping] Presenilin-2 Presenilin-2 NTF subunit Presenilin-2 CTF subunit
Show all
B1AP22
[Direct mapping] Presenilin
Show all
Enzymes
   Peptidases
   Aspartic-type peptidases
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0000776 [kinetochore]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005637 [nuclear inner membrane]
GO:0005743 [mitochondrial inner membrane]
GO:0005765 [lysosomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005813 [centrosome]
GO:0005886 [plasma membrane]
GO:0005938 [cell cortex]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0006816 [calcium ion transport]
GO:0007219 [Notch signaling pathway]
GO:0007220 [Notch receptor processing]
GO:0008233 [peptidase activity]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0030018 [Z disc]
GO:0030426 [growth cone]
GO:0031594 [neuromuscular junction]
GO:0032991 [protein-containing complex]
GO:0034205 [amyloid-beta formation]
GO:0035253 [ciliary rootlet]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0043025 [neuronal cell body]
GO:0043066 [negative regulation of apoptotic process]
GO:0043085 [positive regulation of catalytic activity]
GO:0043198 [dendritic shaft]
GO:0045121 [membrane raft]
GO:0048471 [perinuclear region of cytoplasm]
GO:0050435 [amyloid-beta metabolic process]
GO:0070765 [gamma-secretase complex]
GO:0110097 [regulation of calcium import into the mitochondrion]
GO:1990456 [mitochondrion-endoplasmic reticulum membrane tethering]
Show all
448 aa
50.1 kDa
No 8
PSEN2-202
ENSP00000355747
ENST00000366783
P49810
[Direct mapping] Presenilin-2 Presenilin-2 NTF subunit Presenilin-2 CTF subunit
Show all
Enzymes
   Peptidases
   Aspartic-type peptidases
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0000776 [kinetochore]
GO:0001666 [response to hypoxia]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005637 [nuclear inner membrane]
GO:0005743 [mitochondrial inner membrane]
GO:0005765 [lysosomal membrane]
GO:0005769 [early endosome]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005813 [centrosome]
GO:0005886 [plasma membrane]
GO:0005938 [cell cortex]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0006816 [calcium ion transport]
GO:0007219 [Notch signaling pathway]
GO:0007220 [Notch receptor processing]
GO:0008021 [synaptic vesicle]
GO:0008233 [peptidase activity]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0030018 [Z disc]
GO:0030426 [growth cone]
GO:0031594 [neuromuscular junction]
GO:0032991 [protein-containing complex]
GO:0034205 [amyloid-beta formation]
GO:0035253 [ciliary rootlet]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042734 [presynaptic membrane]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0043025 [neuronal cell body]
GO:0043066 [negative regulation of apoptotic process]
GO:0043085 [positive regulation of catalytic activity]
GO:0043198 [dendritic shaft]
GO:0045121 [membrane raft]
GO:0048471 [perinuclear region of cytoplasm]
GO:0050435 [amyloid-beta metabolic process]
GO:0070765 [gamma-secretase complex]
GO:0097060 [synaptic membrane]
GO:0110097 [regulation of calcium import into the mitochondrion]
GO:1990456 [mitochondrion-endoplasmic reticulum membrane tethering]
Show all
448 aa
50.1 kDa
No 8
PSEN2-203
ENSP00000403737
ENST00000422240
P49810
[Direct mapping] Presenilin-2 Presenilin-2 NTF subunit Presenilin-2 CTF subunit
Show all
Enzymes
   Peptidases
   Aspartic-type peptidases
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0000776 [kinetochore]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005637 [nuclear inner membrane]
GO:0005743 [mitochondrial inner membrane]
GO:0005765 [lysosomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005813 [centrosome]
GO:0005886 [plasma membrane]
GO:0005938 [cell cortex]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0006816 [calcium ion transport]
GO:0007219 [Notch signaling pathway]
GO:0007220 [Notch receptor processing]
GO:0008233 [peptidase activity]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0030018 [Z disc]
GO:0030426 [growth cone]
GO:0031594 [neuromuscular junction]
GO:0032991 [protein-containing complex]
GO:0034205 [amyloid-beta formation]
GO:0035253 [ciliary rootlet]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0043025 [neuronal cell body]
GO:0043066 [negative regulation of apoptotic process]
GO:0043085 [positive regulation of catalytic activity]
GO:0043198 [dendritic shaft]
GO:0045121 [membrane raft]
GO:0048471 [perinuclear region of cytoplasm]
GO:0050435 [amyloid-beta metabolic process]
GO:0070765 [gamma-secretase complex]
GO:0110097 [regulation of calcium import into the mitochondrion]
GO:1990456 [mitochondrion-endoplasmic reticulum membrane tethering]
Show all
447 aa
50 kDa
No 8
PSEN2-204
ENSP00000427912
ENST00000460775
E5RFW4
[Direct mapping] Presenilin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0006508 [proteolysis]
GO:0007219 [Notch signaling pathway]
GO:0008233 [peptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
Show all
144 aa
16.1 kDa
No 3
PSEN2-206
ENSP00000427806
ENST00000472139
E5RG63
[Direct mapping] Presenilin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0006508 [proteolysis]
GO:0007219 [Notch signaling pathway]
GO:0008233 [peptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
Show all
304 aa
34.1 kDa
No 7
PSEN2-209
ENSP00000429682
ENST00000495488
E5RHT1
[Direct mapping] Presenilin-2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004190 [aspartic-type endopeptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
Show all
129 aa
14.5 kDa
No 1
PSEN2-211
ENSP00000429036
ENST00000524196
P49810
[Direct mapping] Presenilin-2 Presenilin-2 NTF subunit Presenilin-2 CTF subunit
Show all
E5RJM5
[Direct mapping] Presenilin-2
Show all
Enzymes
   Peptidases
   Aspartic-type peptidases
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0000776 [kinetochore]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005637 [nuclear inner membrane]
GO:0005743 [mitochondrial inner membrane]
GO:0005765 [lysosomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005813 [centrosome]
GO:0005886 [plasma membrane]
GO:0005938 [cell cortex]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0006816 [calcium ion transport]
GO:0007219 [Notch signaling pathway]
GO:0007220 [Notch receptor processing]
GO:0008233 [peptidase activity]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0030018 [Z disc]
GO:0030426 [growth cone]
GO:0031594 [neuromuscular junction]
GO:0032991 [protein-containing complex]
GO:0034205 [amyloid-beta formation]
GO:0035253 [ciliary rootlet]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0043025 [neuronal cell body]
GO:0043066 [negative regulation of apoptotic process]
GO:0043085 [positive regulation of catalytic activity]
GO:0043198 [dendritic shaft]
GO:0045121 [membrane raft]
GO:0048471 [perinuclear region of cytoplasm]
GO:0050435 [amyloid-beta metabolic process]
GO:0070765 [gamma-secretase complex]
GO:0110097 [regulation of calcium import into the mitochondrion]
GO:1990456 [mitochondrion-endoplasmic reticulum membrane tethering]
Show all
448 aa
50.1 kDa
No 8
PSEN2-212
ENSP00000486498
ENST00000626989
P49810
[Direct mapping] Presenilin-2 Presenilin-2 NTF subunit Presenilin-2 CTF subunit
Show all
B1AP22
[Direct mapping] Presenilin
Show all
Enzymes
   Peptidases
   Aspartic-type peptidases
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0000776 [kinetochore]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005637 [nuclear inner membrane]
GO:0005743 [mitochondrial inner membrane]
GO:0005765 [lysosomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005813 [centrosome]
GO:0005886 [plasma membrane]
GO:0005938 [cell cortex]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0006816 [calcium ion transport]
GO:0007219 [Notch signaling pathway]
GO:0007220 [Notch receptor processing]
GO:0008233 [peptidase activity]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0030018 [Z disc]
GO:0030426 [growth cone]
GO:0031594 [neuromuscular junction]
GO:0032991 [protein-containing complex]
GO:0034205 [amyloid-beta formation]
GO:0035253 [ciliary rootlet]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0043025 [neuronal cell body]
GO:0043066 [negative regulation of apoptotic process]
GO:0043085 [positive regulation of catalytic activity]
GO:0043198 [dendritic shaft]
GO:0045121 [membrane raft]
GO:0048471 [perinuclear region of cytoplasm]
GO:0050435 [amyloid-beta metabolic process]
GO:0070765 [gamma-secretase complex]
GO:0110097 [regulation of calcium import into the mitochondrion]
GO:1990456 [mitochondrion-endoplasmic reticulum membrane tethering]
Show all
448 aa
50.1 kDa
No 8
PSEN2-219
ENSP00000504433
ENST00000676945
A0A7I2V5S6
[Direct mapping] Presenilin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0006508 [proteolysis]
GO:0007219 [Notch signaling pathway]
GO:0008233 [peptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
Show all
527 aa
59.6 kDa
No 7
PSEN2-221
ENSP00000503116
ENST00000677414
P49810
[Direct mapping] Presenilin-2 Presenilin-2 NTF subunit Presenilin-2 CTF subunit
Show all
Enzymes
   Peptidases
   Aspartic-type peptidases
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0000776 [kinetochore]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005637 [nuclear inner membrane]
GO:0005743 [mitochondrial inner membrane]
GO:0005765 [lysosomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005813 [centrosome]
GO:0005886 [plasma membrane]
GO:0005938 [cell cortex]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0006816 [calcium ion transport]
GO:0007219 [Notch signaling pathway]
GO:0007220 [Notch receptor processing]
GO:0008233 [peptidase activity]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0030018 [Z disc]
GO:0030426 [growth cone]
GO:0031594 [neuromuscular junction]
GO:0032991 [protein-containing complex]
GO:0034205 [amyloid-beta formation]
GO:0035253 [ciliary rootlet]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0043025 [neuronal cell body]
GO:0043066 [negative regulation of apoptotic process]
GO:0043085 [positive regulation of catalytic activity]
GO:0043198 [dendritic shaft]
GO:0045121 [membrane raft]
GO:0048471 [perinuclear region of cytoplasm]
GO:0050435 [amyloid-beta metabolic process]
GO:0070765 [gamma-secretase complex]
GO:0110097 [regulation of calcium import into the mitochondrion]
GO:1990456 [mitochondrion-endoplasmic reticulum membrane tethering]
Show all
448 aa
50.1 kDa
No 8
PSEN2-224
ENSP00000503673
ENST00000677599
A0A7I2V3R9
[Direct mapping] Presenilin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0006508 [proteolysis]
GO:0007219 [Notch signaling pathway]
GO:0008233 [peptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
Show all
471 aa
52.6 kDa
No 7
PSEN2-226
ENSP00000503121
ENST00000677880
A0A7I2V2W1
[Direct mapping] Presenilin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0006508 [proteolysis]
GO:0007219 [Notch signaling pathway]
GO:0008233 [peptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
Show all
303 aa
34 kDa
No 7
PSEN2-229
ENSP00000503680
ENST00000678320
A0A7I2V4D0
[Direct mapping] Presenilin-2
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0007219 [Notch signaling pathway]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016485 [protein processing]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
Show all
415 aa
46.5 kDa
No 8
PSEN2-236
ENSP00000504727
ENST00000679088
P49810
[Direct mapping] Presenilin-2 Presenilin-2 NTF subunit Presenilin-2 CTF subunit
Show all
Enzymes
   Peptidases
   Aspartic-type peptidases
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   8TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Cardiovascular diseases
   Cardiac diseases
   Nervous system diseases
   Neurodegenerative diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0000776 [kinetochore]
GO:0004175 [endopeptidase activity]
GO:0004190 [aspartic-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005637 [nuclear inner membrane]
GO:0005743 [mitochondrial inner membrane]
GO:0005765 [lysosomal membrane]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005813 [centrosome]
GO:0005886 [plasma membrane]
GO:0005938 [cell cortex]
GO:0006508 [proteolysis]
GO:0006509 [membrane protein ectodomain proteolysis]
GO:0006816 [calcium ion transport]
GO:0007219 [Notch signaling pathway]
GO:0007220 [Notch receptor processing]
GO:0008233 [peptidase activity]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016324 [apical plasma membrane]
GO:0016485 [protein processing]
GO:0016787 [hydrolase activity]
GO:0030018 [Z disc]
GO:0030426 [growth cone]
GO:0031594 [neuromuscular junction]
GO:0032991 [protein-containing complex]
GO:0034205 [amyloid-beta formation]
GO:0035253 [ciliary rootlet]
GO:0035556 [intracellular signal transduction]
GO:0042500 [aspartic endopeptidase activity, intramembrane cleaving]
GO:0042987 [amyloid precursor protein catabolic process]
GO:0043025 [neuronal cell body]
GO:0043066 [negative regulation of apoptotic process]
GO:0043085 [positive regulation of catalytic activity]
GO:0043198 [dendritic shaft]
GO:0045121 [membrane raft]
GO:0048471 [perinuclear region of cytoplasm]
GO:0050435 [amyloid-beta metabolic process]
GO:0070765 [gamma-secretase complex]
GO:0110097 [regulation of calcium import into the mitochondrion]
GO:1990456 [mitochondrion-endoplasmic reticulum membrane tethering]
Show all
448 aa
50.1 kDa
No 8

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