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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

92.992
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:115.8 nTPM
FANTOM5:30.6 Scaled Tags Per Million
Pig:58.3 nTPM
Allen mouse:11.5 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA063655
Medulla oblongata mean intensity 92.992
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract -
Raphe magnus nucleus 47.649
Cochlear nucleus 39.014
Lateral paragigantocellular nucleus 92.992
Raphe pallidus nucleus 11.638
Facial nucleus 65.746
Hypoglossal nucleus -
Ambiguus nucleus -
External cuneate nucleus -
Inferior olivary nucleus -
Raphe obscures nucleus -
Dorsal motor nucleus of vagus -

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.8
Sample id Sample description nTPM
Area postrema
nTPM: 18.6
2054 Male, age 76, both hemispheres 32.5
2306 Male, age 80, both hemispheres 17.7
2799 Male, age 61, both hemispheres 5.5
Dorsal medullary reticular nucleus
nTPM: 62.7
2040 Female, age 85, both hemispheres 69.7
2088 Male, age 76, both hemispheres 66.3
2373 Male, age 61, both hemispheres 52.0
Dorsal motor vagal complex
nTPM: 35.0
2133 Female, age 91, both hemispheres 80.0
2000 Male, age 74, unknown 62.7
2185 Male, age 76, both hemispheres 49.5
2797 Male, age 61, both hemispheres 20.0
2807 Female, age 85, both hemispheres 19.6
2813 Female, age 72, unknown 18.0
2844 Male, age 55, unknown 15.7
2643 Male, age 74, both hemispheres 14.7
Gigantocellular reticular nuclei, medullary
nTPM: 89.9
2462 Male, age 74, both hemispheres 232.0
2022 Male, age 76, right hemisphere 79.2
2310 Male, age 80, both hemispheres 75.5
1876 Female, age 85, both hemispheres 65.5
2387 Female, age 91, both hemispheres 55.1
2314 Male, age 61, both hemispheres 32.3
Gigantocellular reticular nuclei, pars
nTPM: 93.3
2168 Male, age 76, both hemispheres 159.6
2084 Female, age 85, both hemispheres 87.0
2330 Male, age 80, both hemispheres 76.6
2706 Male, age 80, both hemispheres 75.3
2336 Male, age 61, both hemispheres 67.9
Inferior olive
nTPM: 22.8
2628 Female, age 91, both hemispheres 38.1
2085 Female, age 85, both hemispheres 28.6
2178 Male, age 61, both hemispheres 18.8
2379 Male, age 80, both hemispheres 17.9
2563 Male, age 74, both hemispheres 10.4
Lateral medullary reticular nucleus
nTPM: 47.3
2044 Male, age 76, both hemispheres 116.0
2804 Female, age 91, both hemispheres 49.8
2374 Male, age 61, both hemispheres 35.4
2190 Female, age 85, both hemispheres 32.9
2852 Male, age 80, both hemispheres 29.3
2305 Male, age 74, both hemispheres 20.3
Medial olivary nucleus
nTPM: 18.1
2851 Male, age 80, both hemispheres 35.6
1962 Male, age 76, both hemispheres 17.7
2138 Female, age 91, both hemispheres 12.6
1943 Male, age 61, both hemispheres 6.4
Medial vestibular nucleus
nTPM: 94.3
2093 Male, age 80, both hemispheres 131.8
2624 Male, age 61, both hemispheres 105.8
2803 Female, age 91, both hemispheres 100.5
2134 Male, age 76, both hemispheres 97.4
2743 Female, age 85, both hemispheres 65.3
2801 Male, age 74, both hemispheres 65.1
Motor hypoglossal nucleus
nTPM: 66.3
2125 Female, age 91, both hemispheres 103.5
2132 Female, age 85, both hemispheres 90.8
2461 Male, age 61, both hemispheres 88.0
2182 Male, age 80, both hemispheres 40.3
2277 Male, age 76, both hemispheres 8.9
Nucleus ambiguus
nTPM: 57.5
2096 Female, age 85, both hemispheres 95.9
2071 Male, age 76, both hemispheres 19.2
Nucleus cuneatus
nTPM: 60.0
2100 Male, age 76, both hemispheres 156.1
2131 Male, age 76, both hemispheres 139.6
2564 Male, age 74, both hemispheres 62.1
2376 Male, age 61, both hemispheres 43.3
2381 Male, age 80, both hemispheres 36.0
2562 Male, age 61, both hemispheres 31.2
2808 Female, age 85, both hemispheres 27.2
2380 Male, age 80, both hemispheres 22.5
2805 Female, age 91, both hemispheres 22.2
Nucleus gracilis
nTPM: 22.1
2627 Male, age 74, both hemispheres 25.9
2299 Female, age 85, both hemispheres 23.9
2382 Male, age 80, both hemispheres 16.6
Nucleus raphe obscurus
nTPM: 31.8
2800 Male, age 61, midline 55.0
2845 Female, age 85, midline 35.2
2142 Male, age 76, midline 5.1
Nucleus raphe pallidus
nTPM: 26.2
2183 Male, age 80, midline 34.6
1924 Male, age 61, midline 32.5
2145 Male, age 76, midline 11.3
Nucleus tractus solitarii
nTPM: 40.5
2144 Female, age 91, right hemisphere 90.3
2191 Female, age 85, both hemispheres 40.7
2307 Male, age 80, both hemispheres 15.8
2656 Male, age 76, both hemispheres 15.5
Parvicellular reticular nuclei
nTPM: 115.7
2558 Male, age 74, both hemispheres 182.3
2095 Male, age 76, both hemispheres 92.1
2119 Male, age 80, both hemispheres 72.6
Parvicellular reticular nuclei, medullary
nTPM: 71.7
2189 Female, age 91, both hemispheres 85.5
2091 Female, age 85, both hemispheres 80.0
2181 Male, age 80, left hemisphere 49.7
Peritrigeminal nucleus
nTPM: 81.0
2136 Male, age 76, both hemispheres 95.8
2067 Female, age 85, both hemispheres 74.5
2179 Male, age 61, both hemispheres 72.6
Prepositus hypoglossal nucleus
nTPM: 59.0
2855 Female, age 85, right hemisphere 71.2
2086 Male, age 80, both hemispheres 46.9
Spinal trigeminal nucleus, caudal
nTPM: 78.3
2390 Female, age 91, both hemispheres 142.2
2447 Male, age 76, both hemispheres 134.8
2312 Male, age 61, both hemispheres 42.8
2308 Male, age 80, both hemispheres 40.2
2642 Male, age 74, both hemispheres 31.6
Spinal trigeminal nucleus, interpolar
nTPM: 115.8
2625 Male, age 61, both hemispheres 193.1
2066 Male, age 76, right hemisphere 154.9
2389 Female, age 91, both hemispheres 89.9
2386 Female, age 85, both hemispheres 72.3
2033 Male, age 80, both hemispheres 69.0
Spinal vestibular nucleus
nTPM: 78.9
2186 Female, age 91, both hemispheres 109.2
2780 Male, age 80, both hemispheres 95.9
2796 Male, age 61, both hemispheres 85.2
2748 Male, age 76, both hemispheres 82.7
2806 Female, age 85, both hemispheres 72.1
2384 Male, age 74, both hemispheres 28.1
Superior vestibular nucleus
nTPM: 39.6
2015 Male, age 80, both hemispheres 60.9
2061 Male, age 76, both hemispheres 37.5
2383 Male, age 74, both hemispheres 20.4
Ventral medullary reticular nucleus
nTPM: 47.6
2060 Male, age 76, both hemispheres 60.2
2372 Male, age 61, both hemispheres 35.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 66.7
1986 Male, age 76, both hemispheres 110.0
2741 Female, age 85, both hemispheres 92.3
2302 Female, age 91, both hemispheres 59.1
2180 Male, age 61, both hemispheres 40.6
2118 Male, age 80, both hemispheres 31.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

30.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 30.6
FF:10038-101F2 18-64 years, mixed 53.7
FF:10155-103A2 76 years, female 20.3
FF:10174-103C3 60 years, female 17.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 58.3
Samples: 4

Max nTPM: 80.2
Min nTPM: 11.7
Sample A Female 69.6
Sample B Female 80.2
Sample C Male 71.5
Sample D Male 11.7

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 11.5
1023 Antisense, RP_040526_02_F08, Mouse strain C57BL/6J (56 days, male) 18.8
77454656 Antisense, RP_070129_01_B12, Mouse strain C57BL/6J (56 days, male) 14.3
71152527 Antisense, RP_050719_04_B09, Mouse strain C57BL/6J (56 days, male) 12.8
1025 Sense, RPS_Baylor_37050, Mouse strain C57BL/6J (56 days, male) 0.0

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