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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:189.9 nTPM
HPA Brain:375.9 nTPM
GTEx:189.9 nTPM
FANTOM5:263.4 Scaled Tags Per Million
Pig:80.3 nTPM
Mouse:150.8 nTPM
Allen mouse:17.9 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

375.9
Sample id Sample description nTPM
Amygdala
nTPM: 375.9
2814 Male, age 76, right hemisphere 495.0
2695 Female, age 67, right hemisphere 463.0
1987 Female, age 91, left hemisphere 344.8
2514 Male, age 75, right hemisphere 292.2
2517 Female, age 94, left hemisphere 284.4
Basal amygdala
nTPM: 279.7
2609 Male, age 75, right hemisphere 317.7
2110 Male, age 80, left hemisphere 310.2
1955 Male, age 76, both hemispheres 309.6
2827 Female, age 67, right hemisphere 262.0
2243 Female, age 91, right hemisphere 245.6
2685 Female, age 94, left hemisphere 233.4
Central amygdala
nTPM: 372.0
2515 Male, age 75, right hemisphere 505.5
1905 Male, age 76, both hemispheres 416.5
2701 Female, age 91, right hemisphere 334.3
2826 Female, age 94, left hemisphere 304.1
2239 Male, age 80, left hemisphere 299.6
Corticomedial amygdala
nTPM: 258.4
2428 Male, age 75, right hemisphere 337.1
2829 Male, age 80, left hemisphere 256.8
2242 Female, age 91, right hemisphere 251.5
2240 Male, age 76, both hemispheres 243.3
2429 Female, age 94, left hemisphere 233.7
2535 Female, age 67, right hemisphere 227.9
Lateral amygdala
nTPM: 330.1
2830 Female, age 67, right hemisphere 356.0
2255 Female, age 91, right hemisphere 351.3
1883 Male, age 76, both hemispheres 326.5
2256 Male, age 80, left hemisphere 324.2
2516 Male, age 75, right hemisphere 321.9
2534 Female, age 94, left hemisphere 300.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

189.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 189.9
Samples: 152

Max nTPM: 412.5
Min nTPM: 60.2
Std nTPM: 62.4
Median nTPM: 172.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 412.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 412.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 401.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 347.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 345.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 334.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 315.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 303.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 301.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 301.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 300.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 295.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 294.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 290.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 287.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 280.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 278.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 270.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 268.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 264.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 258.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 255.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 248.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 247.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 246.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 246.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 245.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 244.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 242.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 232.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 229.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 228.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 225.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 224.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 224.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 222.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 220.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 219.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 215.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 214.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 213.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 212.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 209.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 206.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 203.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 202.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 202.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 200.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 200.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 199.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 199.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 198.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 198.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 196.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 196.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 194.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 192.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 188.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 188.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 187.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 186.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 184.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 183.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 183.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 182.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 181.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 181.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 180.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 180.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 178.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 174.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 174.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 174.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 173.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 173.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 173.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 172.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 171.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 170.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 168.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 168.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 168.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 167.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 167.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 166.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 166.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 164.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 164.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 163.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 162.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 162.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 162.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 162.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 161.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 159.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 159.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 159.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 158.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 158.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 158.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 158.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 157.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 157.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 156.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 156.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 155.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 155.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 154.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 154.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 154.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 153.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 152.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 151.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 151.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 151.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 151.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 148.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 146.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 146.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 145.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 145.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 145.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 143.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 143.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 143.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 142.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 141.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 139.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 139.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 137.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 136.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 135.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 135.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 134.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 134.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 132.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 130.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 128.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 127.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 124.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 122.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 120.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 116.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 115.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 115.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 114.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 110.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 106.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 104.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 99.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 89.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 60.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

263.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 263.4
FF:10151-102I7 76 years, female 263.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.3
Pig sample Sample description nTPM
Amygdala
nTPM: 80.3
Samples: 4

Max nTPM: 98.4
Min nTPM: 62.8
Sample A Female 98.4
Sample B Female 78.1
Sample C Male 81.8
Sample D Male 62.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 150.8
Samples: 4

Max nTPM: 169.7
Min nTPM: 142.1
Sample A Male 143.2
Sample B Male 142.1
Sample C Female 169.7
Sample D Female 148.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.9
70429393 Antisense, RP_050614_01_E12, Mouse strain C57BL/6J (56 days, male) 17.9

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