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AFF3
HPA
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  • SUMMARY

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  • AFF3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

AFF3
Synonyms LAF4, MLLT2-like
Gene descriptioni

Full gene name according to HGNC.

ALF transcription elongation factor 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Cancer-related genes
Disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband q11.2
Chromosome location (bp) 99545419 - 100192428
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

18
Ensembl ENSG00000144218 (version 109)
Entrez gene 3899
HGNC HGNC:6473
UniProt P51826 (UniProt - Evidence at protein level)
neXtProt NX_P51826
GeneCards AFF3
Antibodypedia AFF3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Putative transcription activator that may function in lymphoid development and oncogenesis. Binds, in vitro, to double-stranded DNA.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Activator, DNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Transcription, Transcription regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a tissue-restricted nuclear transcriptional activator that is preferentially expressed in lymphoid tissue. Isolation of this protein initially defined a highly conserved LAF4/MLLT2 gene family of nuclear transcription factors that may function in lymphoid development and oncogenesis. In some ALL patients, this gene has been found fused to the gene for MLL. Multiple alternatively spliced transcript variants that encode different proteins have been found for this gene. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
AFF3-201
ENSP00000317421
ENST00000317233
P51826
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0010468 [regulation of gene expression]
GO:0016604 [nuclear body]
GO:0032783 [super elongation complex]
GO:0034612 [response to tumor necrosis factor]
GO:0035116 [embryonic hindlimb morphogenesis]
Show all
1226 aa
133.5 kDa
No 0
AFF3-202
ENSP00000387207
ENST00000409236
P51826
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0010468 [regulation of gene expression]
GO:0016604 [nuclear body]
GO:0032783 [super elongation complex]
GO:0034612 [response to tumor necrosis factor]
GO:0035116 [embryonic hindlimb morphogenesis]
Show all
1226 aa
133.5 kDa
No 0
AFF3-203
ENSP00000386834
ENST00000409579
P51826
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0010468 [regulation of gene expression]
GO:0016604 [nuclear body]
GO:0032783 [super elongation complex]
GO:0034612 [response to tumor necrosis factor]
GO:0035116 [embryonic hindlimb morphogenesis]
Show all
1251 aa
136.4 kDa
No 0
AFF3-204
ENSP00000407448
ENST00000415384
C9JUY1
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
54 aa
6.4 kDa
No 0
AFF3-205
ENSP00000395068
ENST00000416492
C9JMS1
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010468 [regulation of gene expression]
Show all
99 aa
11.6 kDa
No 0
AFF3-206
ENSP00000396582
ENST00000423966
C9JC67
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010468 [regulation of gene expression]
Show all
165 aa
18.8 kDa
No 0
AFF3-207
ENSP00000411383
ENST00000424600
C9J847
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010468 [regulation of gene expression]
Show all
114 aa
13.3 kDa
No 0
AFF3-208
ENSP00000416131
ENST00000427118
C9JIB1
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
17 aa
2 kDa
No 0
AFF3-210
ENSP00000406484
ENST00000432037
C9J622
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010468 [regulation of gene expression]
Show all
161 aa
18.2 kDa
No 0
AFF3-211
ENSP00000393732
ENST00000440445
C9JUC4
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010468 [regulation of gene expression]
Show all
103 aa
12.2 kDa
No 0
AFF3-212
ENSP00000399795
ENST00000441400
C9JZ66
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010468 [regulation of gene expression]
Show all
128 aa
14.7 kDa
No 0
AFF3-213
ENSP00000416685
ENST00000445815
H7C4C2
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0010468 [regulation of gene expression]
GO:0016604 [nuclear body]
Show all
580 aa
64.2 kDa
No 0
AFF3-218
ENSP00000500860
ENST00000672197
A0A5F9ZHV9
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010468 [regulation of gene expression]
Show all
115 aa
13.6 kDa
No 0
AFF3-219
ENSP00000500616
ENST00000672204
A0A5F9ZHV2
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010468 [regulation of gene expression]
Show all
608 aa
65.7 kDa
No 0
AFF3-221
ENSP00000500419
ENST00000672756
P51826
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0003690 [double-stranded DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0006355 [regulation of DNA-templated transcription]
GO:0010468 [regulation of gene expression]
GO:0016604 [nuclear body]
GO:0032783 [super elongation complex]
GO:0034612 [response to tumor necrosis factor]
GO:0035116 [embryonic hindlimb morphogenesis]
Show all
1226 aa
133.5 kDa
No 0
AFF3-223
ENSP00000500270
ENST00000672857
A0A5F9ZHE5
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
43 aa
5.3 kDa
No 0
AFF3-225
ENSP00000500634
ENST00000673232
A0A5F9ZHV9
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010468 [regulation of gene expression]
Show all
115 aa
13.6 kDa
No 0
AFF3-226
ENSP00000500612
ENST00000673328
A0A5F9ZHU9
[Direct mapping] AF4/FMR2 family member 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0010468 [regulation of gene expression]
Show all
143 aa
16.6 kDa
No 0

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