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ABCA12
HPA
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  • ABCA12
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

ABCA12
Synonyms DKFZP434G232, ICR2B, LI2
Gene descriptioni

Full gene name according to HGNC.

ATP binding cassette subfamily A member 12
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Plasma proteins
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband q35
Chromosome location (bp) 214931542 - 215138626
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000144452 (version 109)
Entrez gene 26154
HGNC HGNC:14637
UniProt Q86UK0 (UniProt - Evidence at protein level)
neXtProt NX_Q86UK0
GeneCards ABCA12
Antibodypedia ABCA12 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Transports lipids such as glucosylceramides from the outer to the inner leaflet of lamellar granules (LGs) membrane, whereby the lipids are finally transported to the keratinocyte periphery via the trans-Golgi network and LGs and released to the apical surface of the granular keratinocytes to form lipid lamellae in the stratum corneum of the epidermis, which is essential for skin barrier function 1, 2. In the meantime, participates in the transport of the lamellar granules-associated proteolytic enzymes, in turn regulates desquamation and keratinocyte differentiation 3. Furthermore, is essential for the regulation of cellular cholesterol homeostasis by regulating ABCA1-dependent cholesterol efflux from macrophages through interaction with NR1H2 and ABCA1 (By similarity). Plays pleiotropic roles in regulating glucose stimulated insulin secretion from beta cells, regulating the morphology and fusion of insulin granules, lipid raft abundance and the actin cytoskeleton (By similarity). Also involved in lung surfactant biogenesis (By similarity).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Translocase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Lipid transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intracellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, and White). This encoded protein is a member of the ABC1 subfamily, which is the only major ABC subfamily found exclusively in multicellular eukaryotes. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jul 2008]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
ABCA12-201
ENSP00000272895
ENST00000272895
Q86UK0
[Direct mapping] Glucosylceramide transporter ABCA12
Show all
Enzymes
   ENZYME proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital malformations
   Congenital malformations of skin
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0000166 [nucleotide binding]
GO:0003336 [corneocyte desquamation]
GO:0005102 [signaling receptor binding]
GO:0005319 [lipid transporter activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006672 [ceramide metabolic process]
GO:0006869 [lipid transport]
GO:0006886 [intracellular protein transport]
GO:0010875 [positive regulation of cholesterol efflux]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0019725 [cellular homeostasis]
GO:0030216 [keratinocyte differentiation]
GO:0030658 [transport vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0031424 [keratinization]
GO:0032379 [positive regulation of intracellular lipid transport]
GO:0032940 [secretion by cell]
GO:0033344 [cholesterol efflux]
GO:0033700 [phospholipid efflux]
GO:0034040 [ATPase-coupled lipid transmembrane transporter activity]
GO:0034191 [apolipoprotein A-I receptor binding]
GO:0034204 [lipid translocation]
GO:0035627 [ceramide transport]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0043129 [surfactant homeostasis]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045055 [regulated exocytosis]
GO:0045616 [regulation of keratinocyte differentiation]
GO:0048286 [lung alveolus development]
GO:0051649 [establishment of localization in cell]
GO:0055085 [transmembrane transport]
GO:0055088 [lipid homeostasis]
GO:0061178 [regulation of insulin secretion involved in cellular response to glucose stimulus]
GO:0061436 [establishment of skin barrier]
GO:0072659 [protein localization to plasma membrane]
GO:0097209 [epidermal lamellar body]
GO:0097234 [epidermal lamellar body membrane]
GO:0140326 [ATPase-coupled intramembrane lipid transporter activity]
GO:0140359 [ABC-type transporter activity]
GO:2000010 [positive regulation of protein localization to cell surface]
Show all
2595 aa
293.2 kDa
No >9
ABCA12-202
ENSP00000374312
ENST00000389661
Q86UK0
[Direct mapping] Glucosylceramide transporter ABCA12
Show all
Enzymes
   ENZYME proteins
Transporters
   Primary Active Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Disease related genes
Potential drug targets
Human disease related genes
   Congenital malformations
   Congenital malformations of skin
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0000166 [nucleotide binding]
GO:0003336 [corneocyte desquamation]
GO:0005102 [signaling receptor binding]
GO:0005319 [lipid transporter activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006672 [ceramide metabolic process]
GO:0006869 [lipid transport]
GO:0006886 [intracellular protein transport]
GO:0010875 [positive regulation of cholesterol efflux]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016887 [ATP hydrolysis activity]
GO:0019725 [cellular homeostasis]
GO:0030658 [transport vesicle membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0032379 [positive regulation of intracellular lipid transport]
GO:0032940 [secretion by cell]
GO:0033700 [phospholipid efflux]
GO:0034040 [ATPase-coupled lipid transmembrane transporter activity]
GO:0034191 [apolipoprotein A-I receptor binding]
GO:0034204 [lipid translocation]
GO:0035627 [ceramide transport]
GO:0042626 [ATPase-coupled transmembrane transporter activity]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0045055 [regulated exocytosis]
GO:0045616 [regulation of keratinocyte differentiation]
GO:0055085 [transmembrane transport]
GO:0061178 [regulation of insulin secretion involved in cellular response to glucose stimulus]
GO:0061436 [establishment of skin barrier]
GO:0072659 [protein localization to plasma membrane]
GO:0097209 [epidermal lamellar body]
GO:0097234 [epidermal lamellar body membrane]
GO:0140326 [ATPase-coupled intramembrane lipid transporter activity]
GO:0140359 [ABC-type transporter activity]
Show all
2277 aa
257 kDa
No >9
ABCA12-203
ENSP00000400231
ENST00000412081
E9PBK1
[Direct mapping] Glucosylceramide transporter ABCA12
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital malformations
   Congenital malformations of skin
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0006869 [lipid transport]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0055085 [transmembrane transport]
GO:0140359 [ABC-type transporter activity]
Show all
90 aa
10.7 kDa
No 1

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