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RHBDD1
HPA
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  • RHBDD1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RHBDD1
Synonyms DKFZp547E052
Gene descriptioni

Full gene name according to HGNC.

Rhomboid domain containing 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband q36.3
Chromosome location (bp) 226835581 - 226999215
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000144468 (version 109)
Entrez gene 84236
HGNC HGNC:23081
UniProt Q8TEB9 (UniProt - Evidence at protein level)
neXtProt NX_Q8TEB9
GeneCards RHBDD1
Antibodypedia RHBDD1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Intramembrane-cleaving serine protease that cleaves single transmembrane or multi-pass membrane proteins in the hydrophobic plane of the membrane, luminal loops and juxtamembrane regions. Involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors. Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded membrane proteins. Required for the degradation process of some specific misfolded endoplasmic reticulum (ER) luminal proteins. Participates in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner. Functions in BIK, MPZ, PKD1, PTCRA, RHO, STEAP3 and TRAC processing. Involved in the regulation of exosomal secretion; inhibits the TSAP6-mediated secretion pathway. Involved in the regulation of apoptosis; modulates BIK-mediated apoptotic activity. Also plays a role in the regulation of spermatogenesis; inhibits apoptotic activity in spermatogonia.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase, Protease, Serine protease
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Apoptosis, Differentiation, Spermatogenesis
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables serine-type endopeptidase activity. Involved in several processes, including cellular response to unfolded protein; membrane protein proteolysis; and positive regulation of protein catabolic process. Located in endoplasmic reticulum. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RHBDD1-201
ENSP00000344779
ENST00000341329
Q8TEB9
[Direct mapping] Rhomboid-related protein 4
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Serine-type peptidases
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004175 [endopeptidase activity]
GO:0004252 [serine-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006508 [proteolysis]
GO:0006915 [apoptotic process]
GO:0007283 [spermatogenesis]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0010954 [positive regulation of protein processing]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016787 [hydrolase activity]
GO:0030154 [cell differentiation]
GO:0031293 [membrane protein intracellular domain proteolysis]
GO:0031966 [mitochondrial membrane]
GO:0033619 [membrane protein proteolysis]
GO:0034620 [cellular response to unfolded protein]
GO:0034644 [cellular response to UV]
GO:0036503 [ERAD pathway]
GO:0043066 [negative regulation of apoptotic process]
GO:0043687 [post-translational protein modification]
GO:0044322 [endoplasmic reticulum quality control compartment]
GO:0045732 [positive regulation of protein catabolic process]
GO:0048515 [spermatid differentiation]
GO:0051047 [positive regulation of secretion]
GO:1904211 [membrane protein proteolysis involved in retrograde protein transport, ER to cytosol]
Show all
315 aa
35.8 kDa
No 4
RHBDD1-202
ENSP00000375914
ENST00000392062
Q8TEB9
[Direct mapping] Rhomboid-related protein 4
Show all
Enzymes
   ENZYME proteins
   Hydrolases
   Peptidases
   Serine-type peptidases
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004175 [endopeptidase activity]
GO:0004252 [serine-type endopeptidase activity]
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006508 [proteolysis]
GO:0006915 [apoptotic process]
GO:0007283 [spermatogenesis]
GO:0008233 [peptidase activity]
GO:0008236 [serine-type peptidase activity]
GO:0010954 [positive regulation of protein processing]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016787 [hydrolase activity]
GO:0030154 [cell differentiation]
GO:0031293 [membrane protein intracellular domain proteolysis]
GO:0031966 [mitochondrial membrane]
GO:0033619 [membrane protein proteolysis]
GO:0034620 [cellular response to unfolded protein]
GO:0034644 [cellular response to UV]
GO:0036503 [ERAD pathway]
GO:0043066 [negative regulation of apoptotic process]
GO:0043687 [post-translational protein modification]
GO:0044322 [endoplasmic reticulum quality control compartment]
GO:0045732 [positive regulation of protein catabolic process]
GO:0048515 [spermatid differentiation]
GO:0051047 [positive regulation of secretion]
GO:1904211 [membrane protein proteolysis involved in retrograde protein transport, ER to cytosol]
Show all
315 aa
35.8 kDa
No 4
RHBDD1-203
ENSP00000387269
ENST00000409053
B9A054
[Direct mapping] Rhomboid-related protein 4
Show all
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
157 aa
17.6 kDa
No 0
RHBDD1-204
ENSP00000399694
ENST00000423616
C9K011
[Direct mapping] Rhomboid-related protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0005783 [endoplasmic reticulum]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
151 aa
17.4 kDa
No 2
RHBDD1-205
ENSP00000400765
ENST00000424132
C9J1R4
[Direct mapping] Rhomboid-related protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0005783 [endoplasmic reticulum]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
134 aa
15.6 kDa
No 2
RHBDD1-206
ENSP00000397298
ENST00000436481
C9JAS2
[Direct mapping] Rhomboid-related protein 4
Show all
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016020 [membrane]
Show all
54 aa
6.1 kDa
No 0
RHBDD1-207
ENSP00000410384
ENST00000437454
C9J4C7
[Direct mapping] Rhomboid-related protein 4
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016020 [membrane]
Show all
50 aa
5.7 kDa
No 0
RHBDD1-208
ENSP00000414801
ENST00000443477
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
6 aa
0.8 kDa
No 0
RHBDD1-209
ENSP00000388847
ENST00000448992
C9JQK8
[Direct mapping] Rhomboid-related protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004252 [serine-type endopeptidase activity]
GO:0005783 [endoplasmic reticulum]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
124 aa
14.5 kDa
No 2

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