MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA Brain:18.7 nTPM
GTEx:12.8 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Pig:36.2 nTPM
Mouse:12.7 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 18.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.2
1870 Female, age 42, unknown 18.5
2411 Female, age 72, unknown 17.5
1833 Male, age 53, unknown 17.4
2019 Male, age 18, unknown 16.9
2586 Male, age 75, left hemisphere 16.7
2666 Male, age 74, left hemisphere 16.2
1830 Male, age 51, unknown 15.8
2828 Female, age 72, unknown 15.1
1827 Male, age 72, unknown 15.0
2219 Male, age 76, both hemispheres 12.4
Dorsal raphe nucleus
nTPM: 15.8
2750 Male, age 76, both hemispheres 17.2
2298 Female, age 72, unknown 16.6
2016 Female, age 72, unknown 15.8
1828 Male, age 53, unknown 15.6
2047 Male, age 72, unknown 13.8
Inferior colliculus
nTPM: 15.1
1848 Female, age 42, unknown 15.9
2849 Male, age 72, unknown 15.4
2097 Female, age 72, unknown 14.9
1890 Male, age 53, unknown 14.3
Median raphe nucleus
nTPM: 15.8
2220 Male, age 76, midline 15.8
Periaquaductal grey, anterior
nTPM: 14.3
1947 Male, age 18, unknown 16.2
2502 Female, age 75, unknown 14.1
1795 Male, age 51, unknown 12.5
Periaquaductal grey, dorsal
nTPM: 14.5
2464 Female, age 72, unknown 15.9
1831 Male, age 72, unknown 14.6
1840 Male, age 53, unknown 14.5
2850 Male, age 76, both hemispheres 13.1
Periaquaductal grey, lateral
nTPM: 13.2
2272 Male, age 74, both hemispheres 16.9
2053 Male, age 18, unknown 12.3
2140 Male, age 76, both hemispheres 10.4
Pretectal area
nTPM: 15.2
2007 Male, age 72, unknown 19.6
1815 Male, age 53, unknown 18.3
1816 Male, age 51, unknown 17.0
2667 Female, age 75, unknown 16.6
1817 Female, age 42, unknown 15.8
2273 Male, age 74, both hemispheres 15.8
1944 Female, age 72, unknown 13.7
2825 Male, age 18, unknown 13.2
2407 Male, age 75, both hemispheres 13.0
2224 Female, age 72, unknown 12.4
2316 Male, age 76, right hemisphere 12.4
Red nucleus
nTPM: 18.7
1821 Female, age 72, unknown 21.3
2588 Male, age 74, left hemisphere 21.3
1865 Male, age 51, unknown 19.8
1904 Male, age 53, unknown 19.4
1954 Female, age 42, unknown 19.1
2769 Male, age 72, unknown 19.0
2584 Male, age 75, left hemisphere 18.8
2725 Female, age 75, unknown 18.7
2227 Male, age 72, unknown 17.9
2503 Female, age 72, unknown 17.6
2785 Male, age 18, unknown 16.5
2823 Male, age 76, right hemisphere 14.8
Substantia nigra
nTPM: 13.9
1889 Female, age 72, unknown 16.2
1916 Female, age 42, unknown 15.9
2699 Male, age 18, unknown 15.4
2583 Male, age 75, right hemisphere 14.4
2590 Female, age 75, unknown 14.4
2665 Male, age 74, both hemispheres 13.7
1941 Male, age 53, unknown 13.3
1851 Male, age 51, unknown 13.1
2241 Male, age 72, unknown 11.4
2409 Female, age 72, unknown 11.1
Superior colliculus
nTPM: 15.6
1995 Male, age 72, unknown 17.6
2664 Male, age 75, both hemispheres 17.1
1895 Male, age 76, right hemisphere 16.2
2087 Female, age 72, unknown 16.1
2261 Male, age 18, unknown 15.8
2587 Male, age 74, left hemisphere 15.4
1839 Male, age 51, unknown 15.2
1796 Male, age 53, unknown 14.8
1913 Female, age 42, unknown 14.6
2668 Female, age 75, unknown 13.6
Ventral tegmental area
nTPM: 15.2
2410 Female, age 72, unknown 18.3
1942 Male, age 51, unknown 15.6
2223 Female, age 72, unknown 15.6
2218 Male, age 76, both hemispheres 14.9
1915 Female, age 42, unknown 13.8
2021 Male, age 53, unknown 12.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.8
Samples: 139

Max nTPM: 20.6
Min nTPM: 5.8
Std nTPM: 2.7
Median nTPM: 12.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 20.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 19.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 19.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 18.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 18.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 18.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 18.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 18.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 17.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 17.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.1
FF:10158-103A5 76 years, female 69.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.1
Samples: 4

Max nTPM: 38.2
Min nTPM: 28.2
Sample A Female 38.2
Sample B Female 28.2
Sample C Male 35.2
Sample D Male 30.8
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 38.8
Min nTPM: 35.0
Sample A Female 35.0
Sample B Female 35.0
Sample C Male 35.9
Sample D Male 38.8
Periaqueductal gray
nTPM: 29.9
Samples: 3

Max nTPM: 31.3
Min nTPM: 29.2
Sample B Female 29.3
Sample C Male 31.3
Sample D Male 29.2
Superior colliculi
nTPM: 35.7
Samples: 4

Max nTPM: 41.3
Min nTPM: 23.5
Sample A Female 41.3
Sample B Female 23.5
Sample C Male 40.4
Sample D Male 37.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.7
Samples: 4

Max nTPM: 14.1
Min nTPM: 11.9
Sample A Male 12.7
Sample B Male 11.9
Sample C Female 11.9
Sample D Female 14.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
71608393 Antisense, RP_050927_01_F10, Mouse strain C57BL/6J (56 days, male) 1.4
356493 Antisense, RP_040617_02_F08, Mouse strain C57BL/6J (56 days, male) 0.5

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