MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA Brain:25.1 nTPM
GTEx:14.1 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:16.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 25.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.6
2586 Male, age 75, left hemisphere 29.9
2019 Male, age 18, unknown 28.6
1830 Male, age 51, unknown 25.5
1833 Male, age 53, unknown 25.4
2411 Female, age 72, unknown 24.9
1870 Female, age 42, unknown 24.2
2666 Male, age 74, left hemisphere 22.8
2828 Female, age 72, unknown 22.8
1827 Male, age 72, unknown 21.9
2219 Male, age 76, both hemispheres 20.1
Dorsal raphe nucleus
nTPM: 22.7
2750 Male, age 76, both hemispheres 25.0
2016 Female, age 72, unknown 23.0
2047 Male, age 72, unknown 22.6
1828 Male, age 53, unknown 21.9
2298 Female, age 72, unknown 20.7
Inferior colliculus
nTPM: 22.4
1848 Female, age 42, unknown 23.3
2849 Male, age 72, unknown 22.6
1890 Male, age 53, unknown 22.5
2097 Female, age 72, unknown 21.1
Median raphe nucleus
nTPM: 23.5
2220 Male, age 76, midline 23.5
Periaquaductal grey, anterior
nTPM: 22.1
1947 Male, age 18, unknown 23.8
2502 Female, age 75, unknown 22.8
1795 Male, age 51, unknown 19.6
Periaquaductal grey, dorsal
nTPM: 24.3
2850 Male, age 76, both hemispheres 25.9
2464 Female, age 72, unknown 25.1
1831 Male, age 72, unknown 23.9
1840 Male, age 53, unknown 22.1
Periaquaductal grey, lateral
nTPM: 23.4
2272 Male, age 74, both hemispheres 24.6
2140 Male, age 76, both hemispheres 23.6
2053 Male, age 18, unknown 22.1
Pretectal area
nTPM: 22.5
2407 Male, age 75, both hemispheres 26.7
1815 Male, age 53, unknown 24.4
1944 Female, age 72, unknown 23.6
1817 Female, age 42, unknown 23.5
2007 Male, age 72, unknown 23.3
2273 Male, age 74, both hemispheres 22.9
2316 Male, age 76, right hemisphere 21.6
1816 Male, age 51, unknown 21.4
2224 Female, age 72, unknown 21.3
2825 Male, age 18, unknown 20.0
2667 Female, age 75, unknown 18.9
Red nucleus
nTPM: 25.1
2584 Male, age 75, left hemisphere 29.4
1865 Male, age 51, unknown 26.9
2785 Male, age 18, unknown 26.1
1904 Male, age 53, unknown 26.0
2823 Male, age 76, right hemisphere 25.3
2725 Female, age 75, unknown 25.0
1954 Female, age 42, unknown 24.6
2227 Male, age 72, unknown 24.1
1821 Female, age 72, unknown 24.0
2769 Male, age 72, unknown 23.6
2503 Female, age 72, unknown 23.5
2588 Male, age 74, left hemisphere 22.5
Substantia nigra
nTPM: 22.1
2241 Male, age 72, unknown 24.9
2583 Male, age 75, right hemisphere 24.7
1941 Male, age 53, unknown 23.5
2409 Female, age 72, unknown 21.8
2590 Female, age 75, unknown 21.8
1889 Female, age 72, unknown 21.7
1851 Male, age 51, unknown 21.5
1916 Female, age 42, unknown 21.1
2699 Male, age 18, unknown 20.3
2665 Male, age 74, both hemispheres 19.7
Superior colliculus
nTPM: 23.7
2668 Female, age 75, unknown 27.4
1839 Male, age 51, unknown 25.0
1995 Male, age 72, unknown 24.7
1913 Female, age 42, unknown 24.1
1895 Male, age 76, right hemisphere 23.2
2261 Male, age 18, unknown 23.0
2664 Male, age 75, both hemispheres 22.7
1796 Male, age 53, unknown 22.6
2087 Female, age 72, unknown 22.2
2587 Male, age 74, left hemisphere 22.0
Ventral tegmental area
nTPM: 21.9
2223 Female, age 72, unknown 25.2
2410 Female, age 72, unknown 24.3
1942 Male, age 51, unknown 22.2
2021 Male, age 53, unknown 20.5
1915 Female, age 42, unknown 20.3
2218 Male, age 76, both hemispheres 19.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 20.1
Min nTPM: 9.9
Std nTPM: 1.8
Median nTPM: 13.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 19.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 19.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 18.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 18.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 17.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 17.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 17.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 17.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.4
FF:10158-103A5 76 years, female 52.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.5
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 11.8
Sample C Male 12.1
Sample D Male 14.3
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 15.8
Min nTPM: 11.9
Sample A Female 15.8
Sample B Female 12.7
Sample C Male 11.9
Sample D Male 13.9
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 13.2
Min nTPM: 11.9
Sample B Female 13.0
Sample C Male 11.9
Sample D Male 13.2
Superior colliculi
nTPM: 11.9
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.2
Sample A Female 11.4
Sample B Female 11.2
Sample C Male 12.2
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 16.9
Min nTPM: 14.9
Sample A Male 14.9
Sample B Male 16.9
Sample C Female 16.6
Sample D Female 15.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68799107 Antisense, RP_050217_02_A09, Mouse strain C57BL/6J (56 days, male) 0.7

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