BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA Brain:15.4 nTPM
GTEx:11.1 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:4.1 nTPM
Mouse:7.3 nTPM
Allen mouse:1.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 15.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.6
1781 Male, age 74, unknown 33.6
2481 Female, age 94, left hemisphere 15.8
1854 Male, age 80, left hemisphere 12.1
2289 Male, age 61, right hemisphere 11.4
2290 Female, age 72, unknown 10.5
1857 Female, age 85, left hemisphere 9.7
2288 Male, age 75, left hemisphere 8.0
2846 Female, age 79, unknown 7.9
Globus pallidus, externus
nTPM: 15.2
1996 Male, age 80, right hemisphere 18.3
2646 Male, age 61, right hemisphere 15.9
2567 Female, age 72, unknown 15.1
2772 Female, age 79, unknown 14.2
2395 Male, age 75, both hemispheres 12.2
Globus pallidus, internus
nTPM: 14.0
2037 Male, age 80, right hemisphere 16.3
2111 Female, age 85, right hemisphere 14.9
2566 Female, age 72, unknown 14.7
2287 Male, age 75, right hemisphere 14.0
2483 Female, age 94, right hemisphere 13.5
2778 Female, age 91, both hemispheres 12.5
1818 Male, age 74, unknown 12.3
Nucleus accumbens
nTPM: 10.5
2732 Male, age 80, right hemisphere 16.3
1806 Female, age 85, left hemisphere 11.7
1783 Male, age 74, unknown 11.1
2391 Female, age 94, left hemisphere 11.0
2698 Female, age 72, unknown 9.9
2286 Male, age 75, left hemisphere 9.5
1856 Female, age 91, right hemisphere 8.0
2824 Male, age 61, right hemisphere 6.6
Nucleus basalis of Meynert
nTPM: 12.8
2569 Male, age 61, both hemispheres 19.6
2484 Female, age 94, left hemisphere 11.6
2821 Male, age 75, both hemispheres 10.8
2393 Male, age 80, right hemisphere 9.1
Nucleus of the diagonal band
nTPM: 12.8
1812 Female, age 91, both hemispheres 17.6
1979 Male, age 74, unknown 13.7
2195 Female, age 85, both hemispheres 12.8
2775 Male, age 80, right hemisphere 11.8
2029 Male, age 61, right hemisphere 8.2
Putamen
nTPM: 9.6
2647 Male, age 75, left hemisphere 13.8
2489 Female, age 72, unknown 11.7
2482 Female, age 94, left hemisphere 10.3
1838 Male, age 80, right hemisphere 8.3
1937 Female, age 91, right hemisphere 7.9
1829 Male, age 74, unknown 7.6
2466 Female, age 79, unknown 7.3
Septal nuclei
nTPM: 15.4
1960 Male, age 74, unknown 17.7
2199 Male, age 80, right hemisphere 17.5
2009 Female, age 91, both hemispheres 15.9
2059 Female, age 85, both hemispheres 15.8
2394 Male, age 61, left hemisphere 14.4
2031 Female, age 72, unknown 14.2
2629 Female, age 94, right hemisphere 12.0
Stria terminalis, bed nucleus
nTPM: 11.6
1974 Female, age 91, both hemispheres 12.3
2486 Female, age 94, both hemispheres 12.2
2201 Male, age 74, unknown 10.4

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 11.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.1
Samples: 246

Max nTPM: 59.8
Min nTPM: 1.3
Std nTPM: 7.9
Median nTPM: 9.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 59.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 42.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 37.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 37.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 35.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 34.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 31.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 31.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 29.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 28.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 28.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.6
Samples: 246

Max nTPM: 47.7
Min nTPM: 2.1
Std nTPM: 8.2
Median nTPM: 8.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 47.7
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 47.6
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 45.4
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 43.3
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 36.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 32.5
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 31.2
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 30.8
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 29.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 28.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 28.5
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Brain - Putamen (basal ganglia)
Average nTPM: 11.0
Samples: 205

Max nTPM: 62.4
Min nTPM: 1.6
Std nTPM: 8.2
Median nTPM: 8.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 62.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 38.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 34.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 32.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 32.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 31.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 31.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 30.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 28.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 28.2
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 27.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.7
FF:10164-103B2 76 years, female 11.7
Nucleus accumbens
Scaled Tags Per Million: 14.7
FF:10037-101F1 23-56 years, mixed 14.7
Putamen
Scaled Tags Per Million: 30.3
FF:10176-103C5 60 years, female 30.3
Globus pallidus
Scaled Tags Per Million: 23.6
FF:10175-103C4 60 years, female 30.6
FF:10161-103A8 76 years, female 16.6

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 4.1
Pig sample Sample description nTPM
Caudate
nTPM: 3.6
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 3.6
Sample C Male 4.5
Sample D Male 3.3
Putamen
nTPM: 3.4
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.3
Sample A Female 3.8
Sample B Female 2.3
Sample C Male 3.2
Sample D Male 4.1
Septum
nTPM: 4.1
Samples: 4

Max nTPM: 5.1
Min nTPM: 2.6
Sample A Female 4.0
Sample B Female 2.6
Sample C Male 4.7
Sample D Male 5.1
Ventral pallidum
nTPM: 4.0
Samples: 4

Max nTPM: 5.8
Min nTPM: 2.3
Sample A Female 2.3
Sample B Female 3.4
Sample C Male 5.8
Sample D Male 4.3

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 7.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.5
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.8
Sample A Male 5.0
Sample B Male 4.8
Sample C Female 6.4
Sample D Female 5.8
Septum
nTPM: 6.0
Samples: 4

Max nTPM: 7.6
Min nTPM: 4.1
Sample A Male 7.6
Sample B Male 6.7
Sample C Female 5.5
Sample D Female 4.1
Ventral forebrain
nTPM: 7.3
Samples: 4

Max nTPM: 9.3
Min nTPM: 5.4
Sample A Male 7.3
Sample B Male 7.3
Sample C Female 5.4
Sample D Female 9.3

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
68667389 Antisense, RP_050201_02_B11, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.4
68667389 Antisense, RP_050201_02_B11, Mouse strain C57BL/6J (56 days, male) 1.4

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