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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
501.7
nTPM
FANTOM5:
72.7
Scaled Tags Per Million
Pig:
64.6
nTPM
Allen mouse:
3.6
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
501.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 439.8
2188
Female, age 91, both hemispheres
541.8
2090
Male, age 80, both hemispheres
490.8
2301
Female, age 85, both hemispheres
464.1
1984
Male, age 76, both hemispheres
262.6
Dorsal cochlear nucleus nTPM: 372.7
2802
Male, age 74, right hemisphere
460.9
2378
Male, age 80, both hemispheres
401.4
2187
Female, age 91, both hemispheres
368.0
2370
Male, age 61, both hemispheres
318.2
2058
Male, age 76, both hemispheres
315.2
Dorsal tegmental nucleus nTPM: 355.5
1936
Male, age 76, left hemisphere
387.0
2326
Male, age 74, both hemispheres
384.4
2083
Male, age 80, both hemispheres
357.9
2358
Male, age 61, both hemispheres
292.7
Dorsolateral tegmental area nTPM: 403.3
2337
Male, age 61, both hemispheres
593.4
2751
Female, age 85, both hemispheres
446.0
2360
Male, age 74, both hemispheres
373.6
2654
Male, age 80, both hemispheres
349.4
2141
Male, age 76, both hemispheres
254.3
Kolliker-Fuse nucleus nTPM: 419.7
2793
Female, age 91, left hemisphere
519.0
2315
Male, age 76, right hemisphere
420.3
2163
Male, age 80, both hemispheres
319.9
Lateral lemniscal nuclei nTPM: 361.7
2320
Female, age 91, left hemisphere
463.4
2746
Female, age 85, left hemisphere
389.1
2036
Male, age 80, both hemispheres
340.2
2453
Male, age 74, right hemisphere
325.8
2169
Male, age 76, both hemispheres
290.2
Lateral parabrachial nucleus nTPM: 479.4
2792
Male, age 76, both hemispheres
759.0
2013
Male, age 80, both hemispheres
462.3
2790
Male, age 61, both hemispheres
425.5
2139
Female, age 85, right hemisphere
270.8
Lateral vestibular nucleus nTPM: 377.9
2311
Male, age 80, both hemispheres
440.6
2184
Male, age 76, both hemispheres
315.2
Locus coeruleus nTPM: 229.2
2162
Male, age 80, both hemispheres
292.3
2788
Male, age 74, unknown
275.9
2720
Male, age 74, both hemispheres
247.8
2317
Female, age 72, unknown
229.2
1980
Male, age 76, both hemispheres
211.0
2123
Female, age 91, both hemispheres
174.7
2014
Male, age 55, unknown
173.7
Medial parabrachial nucleus nTPM: 377.3
2170
Female, age 91, both hemispheres
448.8
2786
Male, age 76, both hemispheres
399.6
2156
Male, age 61, both hemispheres
378.4
2854
Male, age 80, both hemispheres
368.6
2463
Female, age 85, right hemisphere
291.3
Medial periolivary nuclei nTPM: 361.5
2081
Male, age 80, both hemispheres
503.1
2458
Female, age 91, both hemispheres
464.1
2791
Male, age 74, right hemisphere
376.5
2063
Male, age 76, both hemispheres
241.0
2171
Female, age 85, both hemispheres
222.9
Motor facial nucleus nTPM: 357.1
2697
Female, age 85, both hemispheres
492.0
2126
Male, age 61, both hemispheres
448.2
2327
Male, age 80, both hemispheres
425.9
2365
Male, age 74, right hemisphere
299.7
2795
Female, age 91, both hemispheres
274.8
2062
Male, age 76, both hemispheres
202.0
Motor trigeminal nucleus nTPM: 420.5
2321
Female, age 91, both hemispheres
492.4
2309
Male, age 76, both hemispheres
456.8
2335
Male, age 61, both hemispheres
444.6
2079
Male, age 80, both hemispheres
369.9
2560
Male, age 74, both hemispheres
338.9
Nuclei of the trapezoid body nTPM: 326.4
2166
Male, age 80, both hemispheres
462.3
2368
Female, age 91, both hemispheres
364.0
2159
Male, age 61, both hemispheres
345.6
1983
Male, age 76, both hemispheres
243.5
2735
Female, age 85, both hemispheres
216.4
Nucleus raphe magnus nTPM: 294.1
2459
Female, age 91, both hemispheres
419.9
2051
Male, age 76, both hemispheres
370.4
2328
Male, age 80, both hemispheres
355.5
2455
Male, age 74, both hemispheres
278.1
2172
Female, age 85, both hemispheres
201.4
2160
Male, age 61, both hemispheres
139.0
Paramedian reticular nucleus nTPM: 419.5
2052
Male, age 76, both hemispheres
662.7
2057
Male, age 80, both hemispheres
370.0
2050
Female, age 85, both hemispheres
356.1
2313
Male, age 61, both hemispheres
289.0
Pedunculopontine tegmental nucleus nTPM: 412.8
2338
Male, age 61, both hemispheres
609.8
2334
Male, age 80, both hemispheres
337.3
1921
Female, age 85, both hemispheres
291.2
Pontine nuclei nTPM: 356.6
2319
Female, age 91, both hemispheres
536.4
2115
Male, age 80, left hemisphere
477.6
2454
Male, age 74, left hemisphere
465.2
2109
Female, age 72, unknown
386.2
1863
Male, age 55, unknown
328.7
1968
Male, age 76, left hemisphere
314.3
2727
Male, age 61, right hemisphere
190.9
2787
Female, age 85, both hemispheres
153.7
Pontine raphe nucleus nTPM: 296.4
2853
Male, age 76, midline
343.7
2122
Female, age 85, midline
249.0
Posteroventral cochlear nucleus nTPM: 501.7
2135
Female, age 91, both hemispheres
725.7
2341
Male, age 80, both hemispheres
566.3
2371
Male, age 61, both hemispheres
557.1
2070
Male, age 76, both hemispheres
387.6
2752
Female, age 85, both hemispheres
271.5
Principal sensory trigeminal nucleus nTPM: 355.5
2324
Male, age 76, both hemispheres
443.8
2367
Female, age 91, left hemisphere
430.9
2008
Male, age 80, left hemisphere
333.4
2158
Male, age 61, both hemispheres
214.0
Reticular pontine nucleus, caudal nTPM: 378.0
2457
Female, age 91, both hemispheres
415.1
2559
Male, age 74, both hemispheres
397.2
2092
Male, age 76, both hemispheres
355.1
2332
Male, age 80, right hemisphere
344.6
Reticular pontine nucleus, oral nTPM: 357.5
2366
Female, age 91, both hemispheres
471.0
2012
Female, age 85, both hemispheres
391.9
2167
Male, age 76, both hemispheres
364.5
1939
Male, age 80, both hemispheres
341.5
2361
Male, age 74, both hemispheres
218.4
Reticulotegmental nucleus nTPM: 349.4
2333
Male, age 80, both hemispheres
404.6
2322
Female, age 91, both hemispheres
363.0
2452
Male, age 74, both hemispheres
333.0
2325
Male, age 76, both hemispheres
297.2
Spinal trigeminal nucleus, oral nTPM: 302.1
2164
Male, age 80, both hemispheres
376.0
1978
Male, age 76, both hemispheres
303.4
2737
Female, age 85, both hemispheres
226.8
Subcoeruleus area nTPM: 388.5
2369
Female, age 85, left hemisphere
565.5
2451
Male, age 74, both hemispheres
404.3
2089
Male, age 76, left hemisphere
400.3
2323
Female, age 91, left hemisphere
288.2
1958
Male, age 80, both hemispheres
284.3
Superior olive nTPM: 374.2
2020
Male, age 76, both hemispheres
430.6
2329
Male, age 80, right hemisphere
429.0
2561
Female, age 91, both hemispheres
373.3
2364
Male, age 74, right hemisphere
342.4
1875
Female, age 85, both hemispheres
295.6
Ventral periolivary nuclei nTPM: 325.6
2023
Male, age 76, both hemispheres
470.1
2794
Female, age 91, left hemisphere
366.3
2165
Male, age 80, both hemispheres
264.8
2130
Female, age 85, both hemispheres
201.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 387.8
2359
Male, age 61, both hemispheres
467.7
2840
Female, age 85, both hemispheres
439.2
2456
Female, age 91, both hemispheres
416.7
2161
Male, age 80, both hemispheres
356.1
1959
Male, age 76, both hemispheres
350.7
2449
Male, age 74, both hemispheres
296.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
64.6
Pig sample
Sample description
nTPM
Pons nTPM: 64.6
Samples: 4
Max nTPM: 71.7
Min nTPM: 52.2
Sample A
Female
70.8
Sample B
Female
52.2
Sample C
Male
71.7
Sample D
Male
63.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
