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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:15.0 nTPM
HPA:15.0 nTPM
GTEx:12.6 nTPM
FANTOM5:32.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA011173
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.0
overview
Male, age 65
Small intestine sample 232
nTPM: 16.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 15.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 15.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 12.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 12.6
Samples: 187

Max nTPM: 26.9
Min nTPM: 6.0
Std nTPM: 3.9
Median nTPM: 11.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 26.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 26.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 26.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 24.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 24.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 22.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 21.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 21.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 21.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 21.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 20.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 20.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 19.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 18.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 17.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 17.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 17.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 17.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 17.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 17.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 17.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 17.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 16.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 16.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 16.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 16.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 16.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 16.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 16.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 15.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 15.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 15.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 15.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 15.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 15.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 15.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 15.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 15.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 15.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 15.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 15.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 15.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 14.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 14.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 14.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 14.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 14.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 14.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 14.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 14.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 14.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 14.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 14.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 14.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 14.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 13.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 13.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 13.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 13.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 13.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 13.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 13.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 13.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 13.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 13.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 13.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 13.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 13.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 13.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 13.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 13.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 12.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 12.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 12.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 12.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 12.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 12.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 12.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 12.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 12.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 12.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 12.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 12.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 12.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 12.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 12.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 12.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 11.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 11.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 11.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 11.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 11.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 11.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 11.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 11.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 11.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 11.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 11.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 11.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 11.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 11.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 11.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 11.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 11.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 11.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 11.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 11.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 11.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 11.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 11.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 11.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 11.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 11.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 11.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 11.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 11.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 11.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 10.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 10.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 10.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 10.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 10.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 10.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 10.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 10.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 10.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 10.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 10.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 10.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 10.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 10.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 10.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 10.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 10.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 10.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 10.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 10.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 10.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 10.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 10.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 10.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 10.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 9.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 9.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 9.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 9.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 9.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 9.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 9.6
GTEX-1192X-2526-SM-59868 50-59 years, male 9.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 9.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 9.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 9.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 9.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 9.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 9.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 9.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 9.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 9.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 8.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 8.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 8.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 8.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 8.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 8.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 8.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 8.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 8.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 8.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 8.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 8.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 8.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 8.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 7.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 7.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 7.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 7.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 7.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 7.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 7.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 7.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 6.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 6.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 6.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 6.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 6.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 6.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 32.6
FF:10024-101D6 15,40,85 years, mixed 32.6

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