MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:144.1 nTPM
HPA Brain:191.0 nTPM
GTEx:144.1 nTPM
FANTOM5:104.1 Scaled Tags Per Million
Pig:163.9 nTPM
Mouse:131.0 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 191.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.4
2219 Male, age 76, both hemispheres 182.7
1827 Male, age 72, unknown 162.5
2828 Female, age 72, unknown 141.2
2666 Male, age 74, left hemisphere 82.7
2411 Female, age 72, unknown 80.5
1870 Female, age 42, unknown 76.2
2586 Male, age 75, left hemisphere 67.6
1833 Male, age 53, unknown 62.1
1830 Male, age 51, unknown 51.7
2019 Male, age 18, unknown 26.7
Dorsal raphe nucleus
nTPM: 58.9
2750 Male, age 76, both hemispheres 94.8
2298 Female, age 72, unknown 61.7
1828 Male, age 53, unknown 52.6
2016 Female, age 72, unknown 49.9
2047 Male, age 72, unknown 35.4
Inferior colliculus
nTPM: 40.0
1848 Female, age 42, unknown 55.4
2849 Male, age 72, unknown 43.3
1890 Male, age 53, unknown 35.5
2097 Female, age 72, unknown 26.0
Median raphe nucleus
nTPM: 86.2
2220 Male, age 76, midline 86.2
Periaquaductal grey, anterior
nTPM: 64.5
1795 Male, age 51, unknown 99.0
2502 Female, age 75, unknown 66.9
1947 Male, age 18, unknown 27.7
Periaquaductal grey, dorsal
nTPM: 69.3
1831 Male, age 72, unknown 128.7
2850 Male, age 76, both hemispheres 51.5
1840 Male, age 53, unknown 49.9
2464 Female, age 72, unknown 47.3
Periaquaductal grey, lateral
nTPM: 74.0
2053 Male, age 18, unknown 123.0
2272 Male, age 74, both hemispheres 53.0
2140 Male, age 76, both hemispheres 46.0
Pretectal area
nTPM: 62.3
2825 Male, age 18, unknown 94.6
1816 Male, age 51, unknown 83.3
1815 Male, age 53, unknown 78.5
2407 Male, age 75, both hemispheres 70.9
2007 Male, age 72, unknown 64.5
2224 Female, age 72, unknown 57.4
1944 Female, age 72, unknown 53.4
2316 Male, age 76, right hemisphere 52.9
2667 Female, age 75, unknown 49.0
2273 Male, age 74, both hemispheres 46.1
1817 Female, age 42, unknown 34.1
Red nucleus
nTPM: 66.3
2725 Female, age 75, unknown 113.6
2584 Male, age 75, left hemisphere 102.4
2588 Male, age 74, left hemisphere 94.6
1821 Female, age 72, unknown 67.7
2503 Female, age 72, unknown 66.7
1904 Male, age 53, unknown 62.4
1954 Female, age 42, unknown 57.2
1865 Male, age 51, unknown 53.6
2823 Male, age 76, right hemisphere 52.2
2227 Male, age 72, unknown 47.4
2769 Male, age 72, unknown 45.8
2785 Male, age 18, unknown 32.1
Substantia nigra
nTPM: 191.0
2699 Male, age 18, unknown 369.9
1916 Female, age 42, unknown 333.8
1941 Male, age 53, unknown 220.7
1851 Male, age 51, unknown 214.7
2241 Male, age 72, unknown 208.5
2409 Female, age 72, unknown 161.3
2665 Male, age 74, both hemispheres 144.8
1889 Female, age 72, unknown 97.4
2583 Male, age 75, right hemisphere 79.8
2590 Female, age 75, unknown 78.6
Superior colliculus
nTPM: 71.2
1796 Male, age 53, unknown 139.7
2261 Male, age 18, unknown 118.0
2587 Male, age 74, left hemisphere 89.6
2668 Female, age 75, unknown 78.8
1895 Male, age 76, right hemisphere 57.3
2664 Male, age 75, both hemispheres 53.3
1913 Female, age 42, unknown 53.1
1839 Male, age 51, unknown 49.1
2087 Female, age 72, unknown 44.3
1995 Male, age 72, unknown 29.2
Ventral tegmental area
nTPM: 164.2
2218 Male, age 76, both hemispheres 250.0
1915 Female, age 42, unknown 223.1
2410 Female, age 72, unknown 175.1
2223 Female, age 72, unknown 141.4
1942 Male, age 51, unknown 118.2
2021 Male, age 53, unknown 77.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 144.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 144.1
Samples: 139

Max nTPM: 583.4
Min nTPM: 31.1
Std nTPM: 99.1
Median nTPM: 103.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 583.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 456.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 420.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 406.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 389.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 373.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 370.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 352.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 344.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 344.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 340.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 104.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.1
FF:10158-103A5 76 years, female 104.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 163.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 163.9
Samples: 4

Max nTPM: 267.5
Min nTPM: 22.9
Sample A Female 200.4
Sample B Female 164.8
Sample C Male 267.5
Sample D Male 22.9
Midbrain
nTPM: 115.0
Samples: 4

Max nTPM: 228.0
Min nTPM: 43.6
Sample A Female 43.6
Sample B Female 107.4
Sample C Male 228.0
Sample D Male 81.0
Periaqueductal gray
nTPM: 47.4
Samples: 3

Max nTPM: 64.3
Min nTPM: 34.2
Sample B Female 43.8
Sample C Male 64.3
Sample D Male 34.2
Superior colliculi
nTPM: 38.1
Samples: 4

Max nTPM: 42.5
Min nTPM: 34.3
Sample A Female 38.5
Sample B Female 34.3
Sample C Male 37.2
Sample D Male 42.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 131.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 131.0
Samples: 4

Max nTPM: 138.2
Min nTPM: 123.4
Sample A Male 137.5
Sample B Male 124.9
Sample C Female 123.4
Sample D Female 138.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
79904550 Antisense, RP_071218_03_E03, Mouse strain C57BL/6J (56 days, male) 3.3
79908848 Antisense, RP_071218_03_E03, Mouse strain C57BL/6J (56 days, male) 2.8
990 Antisense, RP_Baylor_103043, Mouse strain C57BL/6J (56 days, male) 1.3
986 Antisense, RP_Baylor_103043, Mouse strain C57BL/6J (56 days, male) 0.8

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