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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
335.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 182.6
1984
Male, age 76, both hemispheres
226.6
2188
Female, age 91, both hemispheres
198.7
2090
Male, age 80, both hemispheres
152.8
2301
Female, age 85, both hemispheres
152.2
Dorsal cochlear nucleus nTPM: 179.3
2058
Male, age 76, both hemispheres
213.5
2370
Male, age 61, both hemispheres
186.3
2187
Female, age 91, both hemispheres
174.1
2802
Male, age 74, right hemisphere
170.3
2378
Male, age 80, both hemispheres
152.5
Dorsal tegmental nucleus nTPM: 197.6
2083
Male, age 80, both hemispheres
231.6
1936
Male, age 76, left hemisphere
214.8
2326
Male, age 74, both hemispheres
185.9
2358
Male, age 61, both hemispheres
158.1
Dorsolateral tegmental area nTPM: 201.5
2751
Female, age 85, both hemispheres
226.8
2654
Male, age 80, both hemispheres
222.5
2360
Male, age 74, both hemispheres
218.9
2141
Male, age 76, both hemispheres
212.2
2337
Male, age 61, both hemispheres
127.2
Kolliker-Fuse nucleus nTPM: 217.9
2163
Male, age 80, both hemispheres
258.5
2315
Male, age 76, right hemisphere
197.7
2793
Female, age 91, left hemisphere
197.6
Lateral lemniscal nuclei nTPM: 304.0
2169
Male, age 76, both hemispheres
382.0
2036
Male, age 80, both hemispheres
362.4
2453
Male, age 74, right hemisphere
299.8
2746
Female, age 85, left hemisphere
278.2
2320
Female, age 91, left hemisphere
197.5
Lateral parabrachial nucleus nTPM: 238.6
2139
Female, age 85, right hemisphere
344.5
2013
Male, age 80, both hemispheres
231.2
2790
Male, age 61, both hemispheres
211.8
2792
Male, age 76, both hemispheres
166.9
Lateral vestibular nucleus nTPM: 210.8
2184
Male, age 76, both hemispheres
243.4
2311
Male, age 80, both hemispheres
178.3
Locus coeruleus nTPM: 311.6
2014
Male, age 55, unknown
384.2
2788
Male, age 74, unknown
349.8
2123
Female, age 91, both hemispheres
321.6
2720
Male, age 74, both hemispheres
299.2
2317
Female, age 72, unknown
295.4
1980
Male, age 76, both hemispheres
277.9
2162
Male, age 80, both hemispheres
253.3
Medial parabrachial nucleus nTPM: 211.5
2854
Male, age 80, both hemispheres
236.9
2463
Female, age 85, right hemisphere
216.7
2156
Male, age 61, both hemispheres
210.3
2786
Male, age 76, both hemispheres
203.6
2170
Female, age 91, both hemispheres
190.0
Medial periolivary nuclei nTPM: 285.7
2171
Female, age 85, both hemispheres
392.9
2063
Male, age 76, both hemispheres
386.7
2791
Male, age 74, right hemisphere
269.7
2081
Male, age 80, both hemispheres
194.4
2458
Female, age 91, both hemispheres
184.8
Motor facial nucleus nTPM: 272.5
2062
Male, age 76, both hemispheres
406.7
2365
Male, age 74, right hemisphere
274.7
2795
Female, age 91, both hemispheres
252.2
2327
Male, age 80, both hemispheres
245.0
2697
Female, age 85, both hemispheres
237.7
2126
Male, age 61, both hemispheres
218.6
Motor trigeminal nucleus nTPM: 210.1
2079
Male, age 80, both hemispheres
283.4
2309
Male, age 76, both hemispheres
219.9
2560
Male, age 74, both hemispheres
212.7
2335
Male, age 61, both hemispheres
178.0
2321
Female, age 91, both hemispheres
156.3
Nuclei of the trapezoid body nTPM: 324.8
2159
Male, age 61, both hemispheres
409.9
2735
Female, age 85, both hemispheres
380.4
1983
Male, age 76, both hemispheres
362.0
2166
Male, age 80, both hemispheres
245.4
2368
Female, age 91, both hemispheres
226.5
Nucleus raphe magnus nTPM: 335.3
2160
Male, age 61, both hemispheres
498.5
2172
Female, age 85, both hemispheres
388.4
2455
Male, age 74, both hemispheres
351.6
2051
Male, age 76, both hemispheres
291.0
2328
Male, age 80, both hemispheres
261.9
2459
Female, age 91, both hemispheres
220.2
Paramedian reticular nucleus nTPM: 266.0
2050
Female, age 85, both hemispheres
343.2
2057
Male, age 80, both hemispheres
246.8
2313
Male, age 61, both hemispheres
239.4
2052
Male, age 76, both hemispheres
234.5
Pedunculopontine tegmental nucleus nTPM: 224.1
1921
Female, age 85, both hemispheres
257.9
2334
Male, age 80, both hemispheres
223.7
2338
Male, age 61, both hemispheres
190.5
Pontine nuclei nTPM: 322.0
2727
Male, age 61, right hemisphere
461.5
2787
Female, age 85, both hemispheres
426.7
1863
Male, age 55, unknown
409.0
1968
Male, age 76, left hemisphere
335.5
2109
Female, age 72, unknown
325.4
2454
Male, age 74, left hemisphere
217.2
2115
Male, age 80, left hemisphere
202.5
2319
Female, age 91, both hemispheres
198.5
Pontine raphe nucleus nTPM: 269.0
2122
Female, age 85, midline
321.1
2853
Male, age 76, midline
216.9
Posteroventral cochlear nucleus nTPM: 197.8
2752
Female, age 85, both hemispheres
272.3
2070
Male, age 76, both hemispheres
216.8
2371
Male, age 61, both hemispheres
176.3
2341
Male, age 80, both hemispheres
171.6
2135
Female, age 91, both hemispheres
152.1
Principal sensory trigeminal nucleus nTPM: 296.1
2158
Male, age 61, both hemispheres
432.0
2008
Male, age 80, left hemisphere
342.3
2324
Male, age 76, both hemispheres
208.7
2367
Female, age 91, left hemisphere
201.4
Reticular pontine nucleus, caudal nTPM: 240.2
2092
Male, age 76, both hemispheres
303.5
2332
Male, age 80, right hemisphere
262.4
2457
Female, age 91, both hemispheres
209.2
2559
Male, age 74, both hemispheres
185.8
Reticular pontine nucleus, oral nTPM: 247.9
2012
Female, age 85, both hemispheres
304.4
1939
Male, age 80, both hemispheres
247.1
2361
Male, age 74, both hemispheres
240.0
2366
Female, age 91, both hemispheres
225.4
2167
Male, age 76, both hemispheres
222.7
Reticulotegmental nucleus nTPM: 219.3
2325
Male, age 76, both hemispheres
288.2
2333
Male, age 80, both hemispheres
211.7
2322
Female, age 91, both hemispheres
192.5
2452
Male, age 74, both hemispheres
184.8
Spinal trigeminal nucleus, oral nTPM: 212.6
2737
Female, age 85, both hemispheres
240.5
2164
Male, age 80, both hemispheres
199.0
1978
Male, age 76, both hemispheres
198.4
Subcoeruleus area nTPM: 232.5
1958
Male, age 80, both hemispheres
293.6
2089
Male, age 76, left hemisphere
281.9
2323
Female, age 91, left hemisphere
223.4
2369
Female, age 85, left hemisphere
200.3
2451
Male, age 74, both hemispheres
163.2
Superior olive nTPM: 267.4
1875
Female, age 85, both hemispheres
370.7
2020
Male, age 76, both hemispheres
294.0
2364
Male, age 74, right hemisphere
252.8
2329
Male, age 80, right hemisphere
223.4
2561
Female, age 91, both hemispheres
195.9
Ventral periolivary nuclei nTPM: 288.8
2130
Female, age 85, both hemispheres
341.7
2165
Male, age 80, both hemispheres
319.1
2023
Male, age 76, both hemispheres
276.8
2794
Female, age 91, left hemisphere
217.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 247.9
1959
Male, age 76, both hemispheres
309.2
2449
Male, age 74, both hemispheres
292.0
2840
Female, age 85, both hemispheres
247.4
2161
Male, age 80, both hemispheres
243.6
2359
Male, age 61, both hemispheres
220.6
2456
Female, age 91, both hemispheres
174.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
174.6
Pig sample
Sample description
nTPM
Pons nTPM: 174.6
Samples: 4
Max nTPM: 207.3
Min nTPM: 144.7
Sample A
Female
207.3
Sample B
Female
144.7
Sample C
Male
160.2
Sample D
Male
186.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
