MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.5 nTPM
HPA Brain:267.2 nTPM
GTEx:73.5 nTPM
FANTOM5:192.6 Scaled Tags Per Million
Pig:183.5 nTPM
Mouse:128.1 nTPM
Allen mouse:16.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 267.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 225.9
1827 Male, age 72, unknown 287.3
2586 Male, age 75, left hemisphere 249.8
2828 Female, age 72, unknown 249.0
2019 Male, age 18, unknown 246.7
2411 Female, age 72, unknown 224.1
2219 Male, age 76, both hemispheres 223.0
2666 Male, age 74, left hemisphere 221.4
1870 Female, age 42, unknown 194.0
1833 Male, age 53, unknown 183.8
1830 Male, age 51, unknown 179.8
Dorsal raphe nucleus
nTPM: 242.8
2298 Female, age 72, unknown 284.6
2047 Male, age 72, unknown 265.9
1828 Male, age 53, unknown 233.2
2750 Male, age 76, both hemispheres 221.3
2016 Female, age 72, unknown 209.0
Inferior colliculus
nTPM: 216.2
2097 Female, age 72, unknown 236.0
1848 Female, age 42, unknown 221.2
1890 Male, age 53, unknown 209.3
2849 Male, age 72, unknown 198.4
Median raphe nucleus
nTPM: 218.2
2220 Male, age 76, midline 218.2
Periaquaductal grey, anterior
nTPM: 235.0
1795 Male, age 51, unknown 257.7
1947 Male, age 18, unknown 232.5
2502 Female, age 75, unknown 214.7
Periaquaductal grey, dorsal
nTPM: 205.2
2464 Female, age 72, unknown 222.6
1840 Male, age 53, unknown 211.3
1831 Male, age 72, unknown 208.5
2850 Male, age 76, both hemispheres 178.3
Periaquaductal grey, lateral
nTPM: 189.6
2053 Male, age 18, unknown 207.4
2272 Male, age 74, both hemispheres 190.6
2140 Male, age 76, both hemispheres 170.9
Pretectal area
nTPM: 258.3
1816 Male, age 51, unknown 352.6
1944 Female, age 72, unknown 331.1
2007 Male, age 72, unknown 308.0
1817 Female, age 42, unknown 296.3
2667 Female, age 75, unknown 265.6
1815 Male, age 53, unknown 264.4
2224 Female, age 72, unknown 243.4
2407 Male, age 75, both hemispheres 209.7
2273 Male, age 74, both hemispheres 201.6
2825 Male, age 18, unknown 196.3
2316 Male, age 76, right hemisphere 172.0
Red nucleus
nTPM: 195.4
1821 Female, age 72, unknown 241.5
2725 Female, age 75, unknown 232.8
2785 Male, age 18, unknown 232.3
2503 Female, age 72, unknown 192.6
2584 Male, age 75, left hemisphere 191.8
1904 Male, age 53, unknown 187.8
1954 Female, age 42, unknown 187.3
1865 Male, age 51, unknown 186.3
2823 Male, age 76, right hemisphere 185.0
2588 Male, age 74, left hemisphere 181.8
2769 Male, age 72, unknown 163.3
2227 Male, age 72, unknown 162.1
Substantia nigra
nTPM: 267.2
1916 Female, age 42, unknown 356.6
1941 Male, age 53, unknown 338.0
1889 Female, age 72, unknown 285.5
2241 Male, age 72, unknown 282.2
1851 Male, age 51, unknown 276.7
2409 Female, age 72, unknown 264.0
2583 Male, age 75, right hemisphere 246.7
2590 Female, age 75, unknown 215.2
2665 Male, age 74, both hemispheres 209.7
2699 Male, age 18, unknown 197.4
Superior colliculus
nTPM: 229.6
2261 Male, age 18, unknown 269.9
2087 Female, age 72, unknown 269.2
1796 Male, age 53, unknown 264.6
1895 Male, age 76, right hemisphere 251.8
2668 Female, age 75, unknown 239.4
2664 Male, age 75, both hemispheres 209.9
1913 Female, age 42, unknown 203.4
1839 Male, age 51, unknown 203.2
2587 Male, age 74, left hemisphere 199.5
1995 Male, age 72, unknown 185.1
Ventral tegmental area
nTPM: 227.9
2410 Female, age 72, unknown 280.3
1915 Female, age 42, unknown 261.4
2218 Male, age 76, both hemispheres 250.0
1942 Male, age 51, unknown 200.9
2223 Female, age 72, unknown 189.4
2021 Male, age 53, unknown 185.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.5
Samples: 139

Max nTPM: 215.5
Min nTPM: 37.4
Std nTPM: 24.4
Median nTPM: 70.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 215.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 180.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 142.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 136.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 132.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 117.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 106.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 106.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 105.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 104.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 103.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 192.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 192.6
FF:10158-103A5 76 years, female 192.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 183.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 151.1
Samples: 4

Max nTPM: 175.5
Min nTPM: 110.9
Sample A Female 175.5
Sample B Female 110.9
Sample C Male 170.6
Sample D Male 147.4
Midbrain
nTPM: 183.5
Samples: 4

Max nTPM: 229.4
Min nTPM: 130.3
Sample A Female 207.9
Sample B Female 130.3
Sample C Male 229.4
Sample D Male 166.4
Periaqueductal gray
nTPM: 132.6
Samples: 3

Max nTPM: 143.5
Min nTPM: 123.5
Sample B Female 130.7
Sample C Male 143.5
Sample D Male 123.5
Superior colliculi
nTPM: 162.5
Samples: 4

Max nTPM: 226.6
Min nTPM: 102.4
Sample A Female 148.8
Sample B Female 102.4
Sample C Male 226.6
Sample D Male 172.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 128.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.1
Samples: 4

Max nTPM: 141.9
Min nTPM: 101.0
Sample A Male 101.0
Sample B Male 138.0
Sample C Female 131.5
Sample D Female 141.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.7
68844707 Antisense, RP_050222_02_C04, Mouse strain C57BL/6J (56 days, male) 18.8
71924087 Antisense, RP_051017_02_H10, Mouse strain C57BL/6J (56 days, male) 14.7

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