MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.7 nTPM
HPA Brain:61.8 nTPM
GTEx:60.7 nTPM
FANTOM5:84.3 Scaled Tags Per Million
Pig:48.6 nTPM
Mouse:179.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 61.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.0
1870 Female, age 42, unknown 59.5
2219 Male, age 76, both hemispheres 54.8
2666 Male, age 74, left hemisphere 50.5
1827 Male, age 72, unknown 48.2
2586 Male, age 75, left hemisphere 47.4
1833 Male, age 53, unknown 45.9
2411 Female, age 72, unknown 45.3
2019 Male, age 18, unknown 44.9
1830 Male, age 51, unknown 42.8
2828 Female, age 72, unknown 41.1
Dorsal raphe nucleus
nTPM: 49.6
1828 Male, age 53, unknown 55.8
2047 Male, age 72, unknown 51.2
2298 Female, age 72, unknown 48.3
2750 Male, age 76, both hemispheres 47.0
2016 Female, age 72, unknown 45.7
Inferior colliculus
nTPM: 53.7
2849 Male, age 72, unknown 61.7
1890 Male, age 53, unknown 59.7
1848 Female, age 42, unknown 47.9
2097 Female, age 72, unknown 45.6
Median raphe nucleus
nTPM: 61.8
2220 Male, age 76, midline 61.8
Periaquaductal grey, anterior
nTPM: 48.8
1795 Male, age 51, unknown 51.7
2502 Female, age 75, unknown 49.3
1947 Male, age 18, unknown 45.3
Periaquaductal grey, dorsal
nTPM: 49.7
2850 Male, age 76, both hemispheres 72.9
1840 Male, age 53, unknown 46.6
1831 Male, age 72, unknown 42.2
2464 Female, age 72, unknown 37.0
Periaquaductal grey, lateral
nTPM: 47.1
2272 Male, age 74, both hemispheres 48.3
2140 Male, age 76, both hemispheres 47.5
2053 Male, age 18, unknown 45.5
Pretectal area
nTPM: 50.7
2667 Female, age 75, unknown 62.4
1944 Female, age 72, unknown 58.8
1816 Male, age 51, unknown 57.7
1817 Female, age 42, unknown 57.5
2007 Male, age 72, unknown 55.4
1815 Male, age 53, unknown 52.7
2273 Male, age 74, both hemispheres 46.3
2224 Female, age 72, unknown 44.6
2825 Male, age 18, unknown 44.6
2316 Male, age 76, right hemisphere 43.0
2407 Male, age 75, both hemispheres 34.8
Red nucleus
nTPM: 54.9
2725 Female, age 75, unknown 69.1
1865 Male, age 51, unknown 61.8
2503 Female, age 72, unknown 60.4
1821 Female, age 72, unknown 58.8
1904 Male, age 53, unknown 55.8
2823 Male, age 76, right hemisphere 55.5
2785 Male, age 18, unknown 54.9
1954 Female, age 42, unknown 53.9
2769 Male, age 72, unknown 50.7
2227 Male, age 72, unknown 48.8
2588 Male, age 74, left hemisphere 46.1
2584 Male, age 75, left hemisphere 42.4
Substantia nigra
nTPM: 61.5
1916 Female, age 42, unknown 83.4
2699 Male, age 18, unknown 80.5
2409 Female, age 72, unknown 71.3
2665 Male, age 74, both hemispheres 63.5
2241 Male, age 72, unknown 63.2
1889 Female, age 72, unknown 59.9
1941 Male, age 53, unknown 58.0
1851 Male, age 51, unknown 57.5
2583 Male, age 75, right hemisphere 42.5
2590 Female, age 75, unknown 35.6
Superior colliculus
nTPM: 46.4
1895 Male, age 76, right hemisphere 59.1
1913 Female, age 42, unknown 48.5
2587 Male, age 74, left hemisphere 48.3
2668 Female, age 75, unknown 48.2
1796 Male, age 53, unknown 45.6
2087 Female, age 72, unknown 45.3
2261 Male, age 18, unknown 45.0
1995 Male, age 72, unknown 44.2
1839 Male, age 51, unknown 42.3
2664 Male, age 75, both hemispheres 37.6
Ventral tegmental area
nTPM: 54.7
1915 Female, age 42, unknown 63.4
2218 Male, age 76, both hemispheres 61.8
2223 Female, age 72, unknown 56.3
2410 Female, age 72, unknown 52.8
1942 Male, age 51, unknown 49.4
2021 Male, age 53, unknown 44.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 60.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.7
Samples: 139

Max nTPM: 106.9
Min nTPM: 20.6
Std nTPM: 14.2
Median nTPM: 59.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 106.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 104.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 100.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 93.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 92.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 90.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 88.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 86.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 85.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 85.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 85.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.3
FF:10158-103A5 76 years, female 84.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 48.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.3
Samples: 4

Max nTPM: 58.4
Min nTPM: 29.0
Sample A Female 58.4
Sample B Female 35.0
Sample C Male 50.9
Sample D Male 29.0
Midbrain
nTPM: 45.8
Samples: 4

Max nTPM: 57.4
Min nTPM: 38.4
Sample A Female 45.7
Sample B Female 41.7
Sample C Male 57.4
Sample D Male 38.4
Periaqueductal gray
nTPM: 35.9
Samples: 3

Max nTPM: 44.4
Min nTPM: 28.9
Sample B Female 34.5
Sample C Male 44.4
Sample D Male 28.9
Superior colliculi
nTPM: 48.6
Samples: 4

Max nTPM: 64.6
Min nTPM: 35.3
Sample A Female 51.3
Sample B Female 35.3
Sample C Male 64.6
Sample D Male 43.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 179.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 179.1
Samples: 4

Max nTPM: 198.9
Min nTPM: 158.2
Sample A Male 198.9
Sample B Male 167.4
Sample C Female 158.2
Sample D Female 191.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75214950 Antisense, RP_060427_02_B06, Mouse strain C57BL/6J (56 days, male) 0.3

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