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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:311.4 nTPM
HPA Brain:126.7 nTPM
GTEx:311.4 nTPM
FANTOM5:67.2 Scaled Tags Per Million
Pig:124.7 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.7
Sample id Sample description nTPM
Amygdala
nTPM: 126.7
2695 Female, age 67, right hemisphere 185.5
2814 Male, age 76, right hemisphere 125.5
2514 Male, age 75, right hemisphere 108.2
2517 Female, age 94, left hemisphere 107.9
1987 Female, age 91, left hemisphere 106.4
Basal amygdala
nTPM: 107.1
2827 Female, age 67, right hemisphere 141.6
2110 Male, age 80, left hemisphere 108.5
2609 Male, age 75, right hemisphere 102.5
2685 Female, age 94, left hemisphere 101.3
2243 Female, age 91, right hemisphere 96.9
1955 Male, age 76, both hemispheres 91.5
Central amygdala
nTPM: 112.8
2826 Female, age 94, left hemisphere 153.1
2239 Male, age 80, left hemisphere 113.5
2515 Male, age 75, right hemisphere 110.0
1905 Male, age 76, both hemispheres 95.2
2701 Female, age 91, right hemisphere 92.1
Corticomedial amygdala
nTPM: 97.9
2535 Female, age 67, right hemisphere 116.8
2829 Male, age 80, left hemisphere 103.3
2429 Female, age 94, left hemisphere 97.1
2428 Male, age 75, right hemisphere 96.6
2240 Male, age 76, both hemispheres 87.9
2242 Female, age 91, right hemisphere 86.0
Lateral amygdala
nTPM: 126.6
2830 Female, age 67, right hemisphere 174.9
2516 Male, age 75, right hemisphere 139.6
2534 Female, age 94, left hemisphere 138.6
2256 Male, age 80, left hemisphere 120.8
2255 Female, age 91, right hemisphere 94.1
1883 Male, age 76, both hemispheres 91.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

311.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 311.4
Samples: 152

Max nTPM: 1180.5
Min nTPM: 95.7
Std nTPM: 161.0
Median nTPM: 265.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1180.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1028.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 936.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 836.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 785.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 590.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 565.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 562.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 561.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 550.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 543.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 538.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 527.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 524.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 513.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 485.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 477.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 467.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 454.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 446.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 441.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 437.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 427.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 419.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 418.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 407.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 405.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 400.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 398.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 393.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 390.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 388.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 386.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 381.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 379.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 375.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 371.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 360.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 353.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 351.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 351.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 344.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 344.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 341.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 338.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 338.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 337.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 334.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 327.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 325.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 324.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 320.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 318.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 317.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 316.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 313.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 313.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 308.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 304.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 304.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 303.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 300.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 297.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 292.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 287.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 286.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 284.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 283.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 279.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 279.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 274.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 274.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 273.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 270.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 268.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 265.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 265.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 264.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 262.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 262.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 261.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 258.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 257.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 257.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 256.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 255.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 253.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 251.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 249.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 247.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 244.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 243.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 242.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 242.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 239.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 239.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 238.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 238.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 237.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 234.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 232.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 232.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 231.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 229.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 228.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 224.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 222.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 221.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 221.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 221.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 217.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 216.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 215.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 213.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 213.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 211.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 211.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 209.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 208.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 207.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 206.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 202.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 200.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 198.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 194.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 194.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 189.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 188.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 184.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 184.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 184.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 184.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 175.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 175.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 175.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 175.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 172.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 171.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 170.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 168.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 167.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 167.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 161.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 158.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 156.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 155.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 147.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 141.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 130.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 126.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 125.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 95.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

67.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 67.2
FF:10151-102I7 76 years, female 67.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.7
Pig sample Sample description nTPM
Amygdala
nTPM: 124.7
Samples: 4

Max nTPM: 155.0
Min nTPM: 70.6
Sample A Female 155.0
Sample B Female 145.9
Sample C Male 127.4
Sample D Male 70.6

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