BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:23.2 nTPM
HPA Brain:49.9 nTPM
GTEx:23.2 nTPM
FANTOM5:124.3 Scaled Tags Per Million
Pig:68.5 nTPM
Mouse:98.3 nTPM
Allen mouse:2.3 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB020834
Glial cells Medium
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 49.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.7
2846 Female, age 79, unknown 55.0
1854 Male, age 80, left hemisphere 53.0
1857 Female, age 85, left hemisphere 51.0
2481 Female, age 94, left hemisphere 48.1
2290 Female, age 72, unknown 47.4
2288 Male, age 75, left hemisphere 44.7
1781 Male, age 74, unknown 42.9
2289 Male, age 61, right hemisphere 39.8
Globus pallidus, externus
nTPM: 38.4
1996 Male, age 80, right hemisphere 48.8
2772 Female, age 79, unknown 43.3
2395 Male, age 75, both hemispheres 42.6
2646 Male, age 61, right hemisphere 29.7
2567 Female, age 72, unknown 27.5
Globus pallidus, internus
nTPM: 40.6
2287 Male, age 75, right hemisphere 51.7
2778 Female, age 91, both hemispheres 44.5
2483 Female, age 94, right hemisphere 44.2
2037 Male, age 80, right hemisphere 42.7
1818 Male, age 74, unknown 41.1
2566 Female, age 72, unknown 30.1
2111 Female, age 85, right hemisphere 29.7
Nucleus accumbens
nTPM: 48.8
2698 Female, age 72, unknown 52.1
1806 Female, age 85, left hemisphere 50.5
1856 Female, age 91, right hemisphere 50.3
2732 Male, age 80, right hemisphere 49.9
1783 Male, age 74, unknown 49.8
2286 Male, age 75, left hemisphere 49.2
2824 Male, age 61, right hemisphere 45.7
2391 Female, age 94, left hemisphere 43.2
Nucleus basalis of Meynert
nTPM: 42.1
2393 Male, age 80, right hemisphere 51.8
2484 Female, age 94, left hemisphere 43.4
2821 Male, age 75, both hemispheres 42.1
2569 Male, age 61, both hemispheres 31.2
Nucleus of the diagonal band
nTPM: 49.9
1979 Male, age 74, unknown 58.5
2775 Male, age 80, right hemisphere 49.9
1812 Female, age 91, both hemispheres 49.7
2195 Female, age 85, both hemispheres 47.5
2029 Male, age 61, right hemisphere 44.0
Putamen
nTPM: 43.7
1838 Male, age 80, right hemisphere 56.8
2466 Female, age 79, unknown 55.3
2482 Female, age 94, left hemisphere 42.9
1937 Female, age 91, right hemisphere 42.5
1829 Male, age 74, unknown 42.1
2489 Female, age 72, unknown 38.9
2647 Male, age 75, left hemisphere 27.6
Septal nuclei
nTPM: 45.5
2031 Female, age 72, unknown 54.8
2009 Female, age 91, both hemispheres 51.2
2199 Male, age 80, right hemisphere 48.0
2629 Female, age 94, right hemisphere 42.9
1960 Male, age 74, unknown 42.5
2394 Male, age 61, left hemisphere 40.2
2059 Female, age 85, both hemispheres 38.5
Stria terminalis, bed nucleus
nTPM: 46.6
2486 Female, age 94, both hemispheres 48.5
1974 Female, age 91, both hemispheres 48.1
2201 Male, age 74, unknown 43.3

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 23.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.6
Samples: 246

Max nTPM: 38.7
Min nTPM: 11.5
Std nTPM: 4.5
Median nTPM: 22.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 38.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 35.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 33.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 32.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 31.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 31.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 30.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 30.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 30.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 30.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 30.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.2
Samples: 246

Max nTPM: 48.2
Min nTPM: 8.7
Std nTPM: 5.3
Median nTPM: 22.7
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 48.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 43.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 36.5
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 35.8
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 35.3
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 35.1
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 34.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 33.8
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 33.4
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 32.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 31.6
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Brain - Putamen (basal ganglia)
Average nTPM: 20.0
Samples: 205

Max nTPM: 36.6
Min nTPM: 9.0
Std nTPM: 4.9
Median nTPM: 19.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 36.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 33.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 31.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 30.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 30.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 30.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 30.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 30.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 29.6
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 29.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 29.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 124.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 124.3
FF:10164-103B2 76 years, female 124.3
Nucleus accumbens
Scaled Tags Per Million: 99.4
FF:10037-101F1 23-56 years, mixed 99.4
Putamen
Scaled Tags Per Million: 115.9
FF:10176-103C5 60 years, female 115.9
Globus pallidus
Scaled Tags Per Million: 89.7
FF:10161-103A8 76 years, female 91.5
FF:10175-103C4 60 years, female 87.8

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 68.5
Pig sample Sample description nTPM
Caudate
nTPM: 55.2
Samples: 4

Max nTPM: 66.5
Min nTPM: 47.7
Sample A Female 66.5
Sample B Female 52.0
Sample C Male 54.6
Sample D Male 47.7
Putamen
nTPM: 63.9
Samples: 4

Max nTPM: 72.3
Min nTPM: 51.9
Sample A Female 69.4
Sample B Female 51.9
Sample C Male 72.3
Sample D Male 61.8
Septum
nTPM: 68.5
Samples: 4

Max nTPM: 76.2
Min nTPM: 63.9
Sample A Female 76.2
Sample B Female 69.1
Sample C Male 64.6
Sample D Male 63.9
Ventral pallidum
nTPM: 61.3
Samples: 4

Max nTPM: 66.2
Min nTPM: 55.7
Sample A Female 58.4
Sample B Female 64.7
Sample C Male 55.7
Sample D Male 66.2

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 98.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 98.3
Samples: 4

Max nTPM: 100.4
Min nTPM: 94.1
Sample A Male 100.4
Sample B Male 94.1
Sample C Female 99.8
Sample D Female 98.9
Septum
nTPM: 80.2
Samples: 4

Max nTPM: 86.9
Min nTPM: 75.2
Sample A Male 86.9
Sample B Male 83.3
Sample C Female 75.2
Sample D Female 75.3
Ventral forebrain
nTPM: 96.6
Samples: 4

Max nTPM: 102.5
Min nTPM: 90.3
Sample A Male 90.3
Sample B Male 102.5
Sample C Female 96.4
Sample D Female 97.2

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.7
631701 Antisense, RP_040907_01_A01, Mouse strain C57BL/6J (56 days, male) 1.7
70928385 Antisense, RP_050808_02_A03, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 2.3
631701 Antisense, RP_040907_01_A01, Mouse strain C57BL/6J (56 days, male) 2.3
70928385 Antisense, RP_050808_02_A03, Mouse strain C57BL/6J (56 days, male) 2.2

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