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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:126.7 nTPM
FANTOM5:86.2 Scaled Tags Per Million
Pig:56.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044171Antibody HPA050400
Glial cells LowNot detected
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 126.7
Samples: 246

Max nTPM: 290.3
Min nTPM: 66.3
Std nTPM: 33.9
Median nTPM: 121.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 290.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 249.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 236.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 223.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 222.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 221.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 217.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 207.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 204.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 203.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 202.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 200.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 199.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 190.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 188.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 187.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 184.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 183.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 183.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 180.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 180.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 180.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 176.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 176.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 172.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 171.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 169.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 165.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 164.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 163.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 162.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 159.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 159.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 159.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 159.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 157.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 157.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 156.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 156.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 153.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 149.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 149.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 147.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 147.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 147.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 147.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 147.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 146.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 145.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 145.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 145.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 144.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 144.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 143.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 142.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 141.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 140.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 140.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 140.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 139.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 139.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 139.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 138.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 137.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 137.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 137.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 137.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 136.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 136.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 136.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 136.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 135.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 135.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 134.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 134.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 134.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 133.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 133.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 133.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 133.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 132.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 132.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 132.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 132.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 132.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 132.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 132.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 131.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 130.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 130.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 130.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 129.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 129.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 129.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 129.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 129.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 129.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 128.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 128.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 128.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 128.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 128.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 127.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 127.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 127.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 127.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 127.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 127.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 126.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 125.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 125.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 125.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 124.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 124.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 123.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 123.2
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 122.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 122.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 122.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 121.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 121.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 121.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 121.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 121.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 120.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 120.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 120.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 120.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 120.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 119.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 119.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 119.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 118.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 118.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 118.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 118.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 117.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 117.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 117.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 117.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 117.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 116.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 116.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 116.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 116.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 116.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 116.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 115.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 115.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 115.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 114.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 114.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 113.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 112.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 112.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 112.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 112.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 112.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 112.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 111.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 111.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 111.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 111.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 109.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 109.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 109.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 109.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 109.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 108.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 108.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 108.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 108.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 108.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 107.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 106.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 106.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 106.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 106.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 105.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 105.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 105.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 105.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 105.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 104.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 104.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 104.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 104.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 104.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 103.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 103.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 103.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 103.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 103.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 102.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 102.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 101.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 100.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 100.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 100.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 99.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 99.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 99.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 98.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 98.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 98.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 98.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 97.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 97.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 96.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 96.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 96.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 94.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 93.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 93.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 92.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 92.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 92.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 92.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 91.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 91.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 90.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 89.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 88.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 88.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 87.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 87.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 86.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 86.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 85.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 85.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 84.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 83.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 83.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 83.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 82.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 80.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 80.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 80.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 80.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 79.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 77.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 77.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 75.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 72.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 71.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 66.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 86.2
FF:10164-103B2 76 years, female 86.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.4
Pig sample Sample description nTPM
Caudate
nTPM: 56.4
Samples: 4

Max nTPM: 69.7
Min nTPM: 49.9
Sample A Female 52.1
Sample B Female 53.8
Sample C Male 69.7
Sample D Male 49.9

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