MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.8 nTPM
HPA Brain:28.8 nTPM
GTEx:29.8 nTPM
FANTOM5:52.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.4
2019 Male, age 18, unknown 28.2
2586 Male, age 75, left hemisphere 26.3
2411 Female, age 72, unknown 25.9
1830 Male, age 51, unknown 24.9
1870 Female, age 42, unknown 24.6
2666 Male, age 74, left hemisphere 24.3
2828 Female, age 72, unknown 23.2
1827 Male, age 72, unknown 22.3
2219 Male, age 76, both hemispheres 22.2
1833 Male, age 53, unknown 21.9
Dorsal raphe nucleus
nTPM: 25.5
2298 Female, age 72, unknown 27.0
2047 Male, age 72, unknown 26.5
2016 Female, age 72, unknown 24.9
1828 Male, age 53, unknown 24.8
2750 Male, age 76, both hemispheres 24.2
Inferior colliculus
nTPM: 22.9
1890 Male, age 53, unknown 24.6
2097 Female, age 72, unknown 23.0
1848 Female, age 42, unknown 22.8
2849 Male, age 72, unknown 21.5
Median raphe nucleus
nTPM: 27.8
2220 Male, age 76, midline 27.8
Periaquaductal grey, anterior
nTPM: 23.0
2502 Female, age 75, unknown 23.5
1795 Male, age 51, unknown 22.8
1947 Male, age 18, unknown 22.8
Periaquaductal grey, dorsal
nTPM: 24.5
1840 Male, age 53, unknown 27.6
1831 Male, age 72, unknown 25.9
2850 Male, age 76, both hemispheres 23.2
2464 Female, age 72, unknown 21.1
Periaquaductal grey, lateral
nTPM: 23.2
2140 Male, age 76, both hemispheres 26.0
2053 Male, age 18, unknown 24.1
2272 Male, age 74, both hemispheres 19.4
Pretectal area
nTPM: 23.6
2224 Female, age 72, unknown 26.0
1944 Female, age 72, unknown 25.0
2007 Male, age 72, unknown 24.6
2407 Male, age 75, both hemispheres 23.8
1815 Male, age 53, unknown 23.6
2273 Male, age 74, both hemispheres 23.6
2825 Male, age 18, unknown 23.4
1817 Female, age 42, unknown 23.0
2316 Male, age 76, right hemisphere 22.2
2667 Female, age 75, unknown 22.2
1816 Male, age 51, unknown 21.9
Red nucleus
nTPM: 26.5
2725 Female, age 75, unknown 32.0
2503 Female, age 72, unknown 30.2
2588 Male, age 74, left hemisphere 29.0
1821 Female, age 72, unknown 28.4
1954 Female, age 42, unknown 26.7
1904 Male, age 53, unknown 26.6
2584 Male, age 75, left hemisphere 26.3
1865 Male, age 51, unknown 26.0
2769 Male, age 72, unknown 24.6
2785 Male, age 18, unknown 23.2
2227 Male, age 72, unknown 23.1
2823 Male, age 76, right hemisphere 22.0
Substantia nigra
nTPM: 28.8
2409 Female, age 72, unknown 35.5
2241 Male, age 72, unknown 34.6
1916 Female, age 42, unknown 31.0
1851 Male, age 51, unknown 28.9
2699 Male, age 18, unknown 28.2
2590 Female, age 75, unknown 27.3
1941 Male, age 53, unknown 26.8
1889 Female, age 72, unknown 26.1
2583 Male, age 75, right hemisphere 25.7
2665 Male, age 74, both hemispheres 24.3
Superior colliculus
nTPM: 23.2
1913 Female, age 42, unknown 24.8
1839 Male, age 51, unknown 24.1
1796 Male, age 53, unknown 23.9
1895 Male, age 76, right hemisphere 23.6
1995 Male, age 72, unknown 23.6
2664 Male, age 75, both hemispheres 23.2
2587 Male, age 74, left hemisphere 23.0
2087 Female, age 72, unknown 22.6
2261 Male, age 18, unknown 22.4
2668 Female, age 75, unknown 20.8
Ventral tegmental area
nTPM: 27.9
1915 Female, age 42, unknown 31.0
1942 Male, age 51, unknown 28.4
2223 Female, age 72, unknown 28.3
2410 Female, age 72, unknown 27.0
2021 Male, age 53, unknown 26.7
2218 Male, age 76, both hemispheres 25.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.8
Samples: 139

Max nTPM: 47.8
Min nTPM: 19.9
Std nTPM: 4.5
Median nTPM: 29.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 47.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 43.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 41.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 41.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 41.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 39.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 38.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 37.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 36.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 36.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 36.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.0
FF:10158-103A5 76 years, female 52.0

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