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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:54.2 nTPM
HPA Brain:129.8 nTPM
GTEx:54.2 nTPM
FANTOM5:74.9 Scaled Tags Per Million
Pig:21.9 nTPM
Mouse:25.5 nTPM
Allen mouse:1.1 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.8
Sample id Sample description nTPM
Amygdala
nTPM: 129.8
2695 Female, age 67, right hemisphere 222.5
2814 Male, age 76, right hemisphere 128.9
2517 Female, age 94, left hemisphere 103.5
1987 Female, age 91, left hemisphere 102.5
2514 Male, age 75, right hemisphere 91.4
Basal amygdala
nTPM: 118.8
2609 Male, age 75, right hemisphere 181.6
2110 Male, age 80, left hemisphere 125.7
1955 Male, age 76, both hemispheres 112.8
2243 Female, age 91, right hemisphere 111.7
2685 Female, age 94, left hemisphere 96.8
2827 Female, age 67, right hemisphere 83.9
Central amygdala
nTPM: 128.8
2515 Male, age 75, right hemisphere 154.3
1905 Male, age 76, both hemispheres 139.8
2239 Male, age 80, left hemisphere 134.9
2826 Female, age 94, left hemisphere 109.3
2701 Female, age 91, right hemisphere 105.6
Corticomedial amygdala
nTPM: 104.6
2428 Male, age 75, right hemisphere 140.1
2829 Male, age 80, left hemisphere 131.3
2242 Female, age 91, right hemisphere 94.2
2429 Female, age 94, left hemisphere 90.4
2240 Male, age 76, both hemispheres 86.3
2535 Female, age 67, right hemisphere 85.4
Lateral amygdala
nTPM: 127.2
2516 Male, age 75, right hemisphere 193.6
2256 Male, age 80, left hemisphere 138.7
1883 Male, age 76, both hemispheres 133.8
2255 Female, age 91, right hemisphere 110.5
2534 Female, age 94, left hemisphere 97.7
2830 Female, age 67, right hemisphere 88.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 54.2
Samples: 152

Max nTPM: 122.2
Min nTPM: 1.2
Std nTPM: 23.7
Median nTPM: 51.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 122.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 117.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 116.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 113.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 109.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 105.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 101.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 100.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 99.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 96.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 94.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 91.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 86.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 86.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 84.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 84.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 84.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 83.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 81.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 79.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 79.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 79.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 77.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 74.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 74.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 73.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 71.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 71.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 71.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 71.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 71.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 71.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 71.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 69.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 68.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 68.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 68.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 68.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 68.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 66.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 66.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 65.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 65.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 64.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 64.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 63.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 63.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 62.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 62.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 62.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 60.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 60.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 60.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 60.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 60.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 59.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 59.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 58.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 58.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 58.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 58.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 58.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 57.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 57.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 56.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 55.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 55.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 54.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 54.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 53.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 52.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 51.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 51.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 51.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 51.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 50.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 50.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 50.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 50.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 49.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 49.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 49.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 48.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 48.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 48.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 48.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 48.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 48.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 48.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 48.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 47.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 47.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 47.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 46.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 46.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 45.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 45.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 44.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 44.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 44.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 43.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 42.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 41.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 41.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 40.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 40.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 39.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 39.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 36.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 36.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 36.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 36.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 34.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 34.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 34.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 33.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 33.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 33.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 32.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 31.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 31.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 31.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 30.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 30.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 29.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 29.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 29.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 28.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 26.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 26.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 25.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 25.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 24.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 24.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 24.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 23.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 23.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 23.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 23.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 22.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 22.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 20.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 19.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 17.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 16.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 14.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 9.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 8.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

74.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 74.9
FF:10151-102I7 76 years, female 74.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.9
Pig sample Sample description nTPM
Amygdala
nTPM: 21.9
Samples: 4

Max nTPM: 23.7
Min nTPM: 18.8
Sample A Female 23.7
Sample B Female 18.8
Sample C Male 23.6
Sample D Male 21.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 25.5
Samples: 4

Max nTPM: 27.4
Min nTPM: 23.6
Sample A Male 25.8
Sample B Male 23.6
Sample C Female 27.4
Sample D Female 25.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.1
73712870 Antisense, RP_051206_02_E11, Mouse strain C57BL/6J (56 days, male) 1.1

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