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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:111.1 nTPM
HPA Brain:269.0 nTPM
GTEx:111.1 nTPM
FANTOM5:142.2 Scaled Tags Per Million
Pig:79.7 nTPM
Mouse:8.8 nTPM
Allen mouse:4.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.0
Sample id Sample description nTPM
Amygdala
nTPM: 203.9
2695 Female, age 67, right hemisphere 337.4
2814 Male, age 76, right hemisphere 229.4
2517 Female, age 94, left hemisphere 156.2
1987 Female, age 91, left hemisphere 155.8
2514 Male, age 75, right hemisphere 140.7
Basal amygdala
nTPM: 191.9
2827 Female, age 67, right hemisphere 365.2
2609 Male, age 75, right hemisphere 189.4
2685 Female, age 94, left hemisphere 181.4
1955 Male, age 76, both hemispheres 152.8
2110 Male, age 80, left hemisphere 148.2
2243 Female, age 91, right hemisphere 114.1
Central amygdala
nTPM: 240.0
2826 Female, age 94, left hemisphere 471.6
1905 Male, age 76, both hemispheres 211.7
2515 Male, age 75, right hemisphere 195.0
2701 Female, age 91, right hemisphere 165.7
2239 Male, age 80, left hemisphere 156.1
Corticomedial amygdala
nTPM: 126.9
2535 Female, age 67, right hemisphere 198.7
2428 Male, age 75, right hemisphere 154.9
2240 Male, age 76, both hemispheres 115.3
2829 Male, age 80, left hemisphere 112.9
2429 Female, age 94, left hemisphere 96.8
2242 Female, age 91, right hemisphere 82.8
Lateral amygdala
nTPM: 269.0
2830 Female, age 67, right hemisphere 486.7
2516 Male, age 75, right hemisphere 286.0
2534 Female, age 94, left hemisphere 261.4
2256 Male, age 80, left hemisphere 224.8
1883 Male, age 76, both hemispheres 188.2
2255 Female, age 91, right hemisphere 166.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 111.1
Samples: 152

Max nTPM: 480.5
Min nTPM: 19.4
Std nTPM: 73.0
Median nTPM: 88.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 480.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 362.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 329.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 318.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 308.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 291.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 273.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 272.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 261.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 258.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 255.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 226.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 211.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 208.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 203.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 200.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 199.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 196.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 186.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 183.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 177.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 168.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 165.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 164.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 163.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 159.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 159.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 155.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 155.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 152.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 151.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 151.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 150.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 143.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 142.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 142.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 136.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 136.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 135.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 135.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 132.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 130.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 126.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 126.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 126.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 125.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 125.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 122.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 122.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 121.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 117.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 117.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 116.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 113.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 113.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 113.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 110.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 108.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 108.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 106.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 105.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 102.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 100.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 98.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 98.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 97.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 96.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 95.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 93.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 91.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 90.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 89.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 89.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 87.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 86.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 85.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 85.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 83.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 81.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 80.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 80.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 79.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 78.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 76.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 75.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 75.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 74.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 72.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 72.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 72.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 72.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 71.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 70.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 69.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 69.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 69.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 69.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 68.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 67.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 67.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 66.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 66.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 64.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 64.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 63.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 63.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 63.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 61.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 61.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 60.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 60.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 59.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 59.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 59.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 58.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 58.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 57.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 56.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 56.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 55.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 55.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 54.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 54.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 53.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 52.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 50.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 49.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 48.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 48.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 48.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 45.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 45.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 45.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 44.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 43.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 41.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 41.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 41.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 41.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 39.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 39.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 38.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 34.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 28.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 21.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 19.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

142.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 142.2
FF:10151-102I7 76 years, female 142.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.7
Pig sample Sample description nTPM
Amygdala
nTPM: 79.7
Samples: 4

Max nTPM: 110.8
Min nTPM: 61.8
Sample A Female 64.9
Sample B Female 110.8
Sample C Male 81.1
Sample D Male 61.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 8.8
Samples: 4

Max nTPM: 12.0
Min nTPM: 7.3
Sample A Male 7.6
Sample B Male 8.4
Sample C Female 12.0
Sample D Female 7.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.6
74511880 Antisense, RP_051121_04_A01, Mouse strain C57BL/6J (56 days, male) 6.2
68667288 Antisense, RP_050201_02_A02, Mouse strain C57BL/6J (56 days, male) 3.1

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