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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:57.2 nTPM
HPA Brain:25.8 nTPM
GTEx:57.2 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:33.3 nTPM
Mouse:2.5 nTPM
Allen mouse:1.2 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.8
Sample id Sample description nTPM
Amygdala
nTPM: 25.8
1987 Female, age 91, left hemisphere 31.8
2514 Male, age 75, right hemisphere 27.1
2695 Female, age 67, right hemisphere 25.3
2814 Male, age 76, right hemisphere 22.9
2517 Female, age 94, left hemisphere 22.0
Basal amygdala
nTPM: 18.7
2609 Male, age 75, right hemisphere 22.8
1955 Male, age 76, both hemispheres 21.9
2110 Male, age 80, left hemisphere 20.9
2685 Female, age 94, left hemisphere 17.5
2243 Female, age 91, right hemisphere 16.7
2827 Female, age 67, right hemisphere 12.2
Central amygdala
nTPM: 20.4
2515 Male, age 75, right hemisphere 26.3
1905 Male, age 76, both hemispheres 21.0
2239 Male, age 80, left hemisphere 19.3
2826 Female, age 94, left hemisphere 18.9
2701 Female, age 91, right hemisphere 16.8
Corticomedial amygdala
nTPM: 20.2
2428 Male, age 75, right hemisphere 27.9
2242 Female, age 91, right hemisphere 22.0
2829 Male, age 80, left hemisphere 20.6
2240 Male, age 76, both hemispheres 19.0
2429 Female, age 94, left hemisphere 18.5
2535 Female, age 67, right hemisphere 13.3
Lateral amygdala
nTPM: 18.7
2516 Male, age 75, right hemisphere 22.5
1883 Male, age 76, both hemispheres 21.9
2256 Male, age 80, left hemisphere 19.9
2830 Female, age 67, right hemisphere 16.3
2534 Female, age 94, left hemisphere 16.1
2255 Female, age 91, right hemisphere 15.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 57.2
Samples: 152

Max nTPM: 183.6
Min nTPM: 23.0
Std nTPM: 21.9
Median nTPM: 52.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 183.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 133.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 127.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 121.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 102.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 100.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 98.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 97.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 96.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 95.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 94.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 90.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 88.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 88.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 88.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 86.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 84.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 80.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 80.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 77.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 77.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 74.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 74.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 73.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 72.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 71.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 70.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 70.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 69.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 69.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 68.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 68.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 68.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 66.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 66.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 66.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 64.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 64.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 64.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 63.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 63.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 63.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 62.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 61.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 61.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 60.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 60.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 59.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 59.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 58.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 58.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 57.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 57.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 57.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 57.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 57.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 57.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 57.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 57.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 56.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 56.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 56.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 55.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 55.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 55.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 55.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 55.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 54.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 54.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 54.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 54.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 54.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 53.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 53.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 53.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 52.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 52.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 51.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 51.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 51.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 50.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 50.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 50.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 49.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 49.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 49.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 48.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 48.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 48.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 47.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 47.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 47.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 47.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 47.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 47.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 47.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 46.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 46.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 46.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 46.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 46.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 46.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 46.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 45.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 45.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 45.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 45.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 44.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 44.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 44.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 44.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 44.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 43.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 43.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 43.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 43.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 42.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 42.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 42.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 41.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 40.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 40.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 40.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 40.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 40.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 40.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 40.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 39.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 38.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 38.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 38.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 38.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 38.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 38.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 38.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 37.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 37.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 37.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 35.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 34.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 33.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 33.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 33.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 30.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 29.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 29.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 28.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 27.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 27.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 23.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 19.9
FF:10151-102I7 76 years, female 19.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.3
Pig sample Sample description nTPM
Amygdala
nTPM: 33.3
Samples: 4

Max nTPM: 41.0
Min nTPM: 24.2
Sample A Female 41.0
Sample B Female 35.2
Sample C Male 32.6
Sample D Male 24.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 2.5
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.1
Sample A Male 2.4
Sample B Male 2.1
Sample C Female 2.5
Sample D Female 2.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.2
71489780 Antisense, RP_050512_04_B06, Mouse strain C57BL/6J (56 days, male) 1.2
Cortical subplate
Expression energy: 1.2
71489780 Antisense, RP_050512_04_B06, Mouse strain C57BL/6J (56 days, male) 1.2

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