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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:32.7 nTPM
HPA Brain:39.6 nTPM
GTEx:32.7 nTPM
FANTOM5:167.4 Scaled Tags Per Million
Pig:47.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 37.3
1981 Female, age 72, midline 50.9
2048 Male, age 55, midline 40.6
2565 Male, age 75, midline 38.0
2194 Female, age 79, both hemispheres 28.8
2816 Male, age 47, midline 28.2
Cervical spinal cord, dorsal horn
nTPM: 39.6
2069 Male, age 47, both hemispheres 48.5
2173 Female, age 72, unknown 46.8
1877 Male, age 55, unknown 37.3
2721 Male, age 90, both hemispheres 37.1
2296 Male, age 66, both hemispheres 34.8
2297 Male, age 75, both hemispheres 33.3
Cervical spinal cord, ventral horn
nTPM: 35.9
2098 Female, age 72, unknown 46.5
2295 Male, age 66, both hemispheres 43.1
2809 Male, age 90, both hemispheres 40.3
2480 Male, age 75, both hemispheres 37.2
2068 Male, age 55, unknown 28.4
2820 Female, age 79, both hemispheres 19.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 32.7
Samples: 159

Max nTPM: 72.1
Min nTPM: 22.1
Std nTPM: 6.7
Median nTPM: 31.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 72.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 53.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 50.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 46.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 44.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 44.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 43.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 43.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 43.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 43.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 43.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 42.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 42.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 41.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 41.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 41.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 41.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 40.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 39.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 39.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 39.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 39.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 39.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 39.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 39.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 39.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 38.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 38.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 38.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 38.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 37.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 37.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 37.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 37.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 37.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 37.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 37.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 36.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 36.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 36.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 36.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 36.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 36.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 35.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 35.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 35.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 35.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 35.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 35.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 35.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 35.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 35.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 34.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 34.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 34.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 34.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 34.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 33.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 33.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 33.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 33.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 33.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 32.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 32.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 32.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 32.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 32.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 32.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 32.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 32.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 32.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 31.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 31.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 31.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 31.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 31.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 31.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 31.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 31.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 31.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 31.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 31.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 31.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 31.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 31.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 31.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 31.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 31.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 31.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 30.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 30.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 30.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 30.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 30.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 30.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 30.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 30.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 30.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 30.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 30.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 30.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 29.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 29.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 29.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 29.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 29.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 29.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 29.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 29.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 29.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 29.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 29.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 29.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 29.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 28.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 28.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 28.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 28.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 28.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 28.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 28.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 28.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 27.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 27.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 27.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 27.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 27.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 27.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 27.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 27.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 26.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 26.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 26.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 26.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 26.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 26.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 26.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 26.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 25.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 25.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 25.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 25.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 25.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 24.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 24.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 24.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 24.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 24.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 24.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 24.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 24.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 23.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 23.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 23.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 22.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 22.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 22.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 22.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 22.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

167.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 167.4
FF:10181-103D1 60 years, female 227.4
FF:10159-103A6 76 years, female 107.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 46.1
Samples: 4

Max nTPM: 49.3
Min nTPM: 44.3
Sample A Female 44.3
Sample B Female 49.3
Sample C Male 44.6
Sample D Male 46.2
Ventral spinal cord
nTPM: 47.2
Samples: 4

Max nTPM: 51.7
Min nTPM: 44.9
Sample A Female 45.9
Sample B Female 51.7
Sample C Male 46.3
Sample D Male 44.9

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