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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:55.8 nTPM
HPA Brain:33.2 nTPM
GTEx:55.8 nTPM
FANTOM5:125.6 Scaled Tags Per Million
Pig:46.4 nTPM
Mouse:65.2 nTPM
Allen mouse:7.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.2
Sample id Sample description nTPM
Amygdala
nTPM: 33.2
2814 Male, age 76, right hemisphere 36.2
2695 Female, age 67, right hemisphere 35.1
1987 Female, age 91, left hemisphere 35.0
2514 Male, age 75, right hemisphere 34.7
2517 Female, age 94, left hemisphere 25.2
Basal amygdala
nTPM: 24.5
2609 Male, age 75, right hemisphere 32.5
2110 Male, age 80, left hemisphere 30.3
1955 Male, age 76, both hemispheres 28.7
2243 Female, age 91, right hemisphere 26.9
2685 Female, age 94, left hemisphere 17.1
2827 Female, age 67, right hemisphere 11.4
Central amygdala
nTPM: 27.6
1905 Male, age 76, both hemispheres 33.7
2515 Male, age 75, right hemisphere 32.5
2239 Male, age 80, left hemisphere 29.3
2701 Female, age 91, right hemisphere 24.3
2826 Female, age 94, left hemisphere 18.2
Corticomedial amygdala
nTPM: 26.3
2829 Male, age 80, left hemisphere 30.7
2428 Male, age 75, right hemisphere 30.4
2429 Female, age 94, left hemisphere 27.9
2240 Male, age 76, both hemispheres 27.0
2242 Female, age 91, right hemisphere 26.9
2535 Female, age 67, right hemisphere 14.6
Lateral amygdala
nTPM: 23.5
2516 Male, age 75, right hemisphere 31.9
1883 Male, age 76, both hemispheres 31.7
2256 Male, age 80, left hemisphere 22.2
2255 Female, age 91, right hemisphere 21.8
2534 Female, age 94, left hemisphere 21.2
2830 Female, age 67, right hemisphere 12.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 55.8
Samples: 152

Max nTPM: 144.1
Min nTPM: 16.9
Std nTPM: 18.5
Median nTPM: 54.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 144.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 125.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 101.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 91.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 90.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 90.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 88.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 87.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 86.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 86.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 82.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 82.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 82.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 81.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 79.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 79.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 77.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 77.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 76.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 76.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 75.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 75.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 72.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 72.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 70.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 69.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 69.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 68.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 68.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 68.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 68.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 67.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 66.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 66.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 65.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 65.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 65.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 64.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 64.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 64.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 63.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 62.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 62.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 62.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 62.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 62.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 61.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 60.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 60.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 60.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 60.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 60.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 59.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 59.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 59.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 59.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 59.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 59.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 58.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 58.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 58.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 58.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 57.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 57.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 57.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 57.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 57.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 56.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 56.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 56.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 55.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 55.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 55.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 55.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 55.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 54.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 54.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 54.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 54.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 53.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 53.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 52.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 52.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 52.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 52.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 52.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 51.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 51.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 51.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 51.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 51.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 51.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 51.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 50.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 50.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 48.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 48.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 48.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 48.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 48.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 48.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 47.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 47.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 46.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 46.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 45.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 44.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 44.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 44.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 44.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 44.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 44.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 43.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 43.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 42.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 42.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 41.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 41.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 41.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 41.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 40.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 40.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 40.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 40.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 40.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 39.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 39.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 39.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 38.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 38.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 38.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 38.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 37.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 37.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 36.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 35.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 34.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 34.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 31.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 31.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 31.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 31.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 31.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 30.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 30.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 30.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 29.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 19.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 18.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 17.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 125.6
FF:10151-102I7 76 years, female 125.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.4
Pig sample Sample description nTPM
Amygdala
nTPM: 46.5
Samples: 4

Max nTPM: 49.7
Min nTPM: 42.4
Sample A Female 49.7
Sample B Female 49.3
Sample C Male 42.4
Sample D Male 44.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 65.2
Samples: 4

Max nTPM: 67.6
Min nTPM: 62.1
Sample A Male 66.4
Sample B Male 67.6
Sample C Female 64.5
Sample D Female 62.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.3
74819681 Antisense, RP_060315_02_G11, Mouse strain C57BL/6J (56 days, male) 7.4
69549646 Antisense, RP_050310_01_D10, Mouse strain C57BL/6J (56 days, male) 7.2

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