MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.4 nTPM
HPA Brain:57.4 nTPM
GTEx:7.4 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:33.4 nTPM
Mouse:32.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 57.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.8
1827 Male, age 72, unknown 59.0
2828 Female, age 72, unknown 56.1
2586 Male, age 75, left hemisphere 47.2
2666 Male, age 74, left hemisphere 43.2
2411 Female, age 72, unknown 41.0
1870 Female, age 42, unknown 40.3
1830 Male, age 51, unknown 39.8
1833 Male, age 53, unknown 39.2
2219 Male, age 76, both hemispheres 37.5
2019 Male, age 18, unknown 34.7
Dorsal raphe nucleus
nTPM: 52.6
2298 Female, age 72, unknown 64.6
2047 Male, age 72, unknown 54.0
2750 Male, age 76, both hemispheres 52.4
2016 Female, age 72, unknown 49.3
1828 Male, age 53, unknown 42.9
Inferior colliculus
nTPM: 46.1
2097 Female, age 72, unknown 51.3
2849 Male, age 72, unknown 46.5
1848 Female, age 42, unknown 45.8
1890 Male, age 53, unknown 40.7
Median raphe nucleus
nTPM: 57.4
2220 Male, age 76, midline 57.4
Periaquaductal grey, anterior
nTPM: 52.2
1947 Male, age 18, unknown 56.8
1795 Male, age 51, unknown 53.6
2502 Female, age 75, unknown 46.3
Periaquaductal grey, dorsal
nTPM: 51.4
1840 Male, age 53, unknown 58.7
2850 Male, age 76, both hemispheres 52.6
2464 Female, age 72, unknown 50.5
1831 Male, age 72, unknown 44.0
Periaquaductal grey, lateral
nTPM: 53.0
2053 Male, age 18, unknown 58.9
2140 Male, age 76, both hemispheres 53.1
2272 Male, age 74, both hemispheres 47.1
Pretectal area
nTPM: 48.9
2224 Female, age 72, unknown 59.6
2825 Male, age 18, unknown 53.4
2273 Male, age 74, both hemispheres 53.1
1816 Male, age 51, unknown 51.1
1815 Male, age 53, unknown 51.0
1944 Female, age 72, unknown 47.3
2316 Male, age 76, right hemisphere 47.3
2667 Female, age 75, unknown 45.6
2007 Male, age 72, unknown 45.0
1817 Female, age 42, unknown 44.5
2407 Male, age 75, both hemispheres 40.5
Red nucleus
nTPM: 40.9
2725 Female, age 75, unknown 51.7
2503 Female, age 72, unknown 45.4
1954 Female, age 42, unknown 43.5
1821 Female, age 72, unknown 41.8
1865 Male, age 51, unknown 41.3
2769 Male, age 72, unknown 39.8
2227 Male, age 72, unknown 39.3
2588 Male, age 74, left hemisphere 39.2
1904 Male, age 53, unknown 38.5
2823 Male, age 76, right hemisphere 38.2
2584 Male, age 75, left hemisphere 36.8
2785 Male, age 18, unknown 35.9
Substantia nigra
nTPM: 39.4
2409 Female, age 72, unknown 46.2
2583 Male, age 75, right hemisphere 42.6
1889 Female, age 72, unknown 42.4
1916 Female, age 42, unknown 39.7
2590 Female, age 75, unknown 39.5
2241 Male, age 72, unknown 39.1
2665 Male, age 74, both hemispheres 38.4
2699 Male, age 18, unknown 35.9
1941 Male, age 53, unknown 35.3
1851 Male, age 51, unknown 34.5
Superior colliculus
nTPM: 46.1
1796 Male, age 53, unknown 54.1
2261 Male, age 18, unknown 52.9
1839 Male, age 51, unknown 47.0
2087 Female, age 72, unknown 46.3
2664 Male, age 75, both hemispheres 45.1
1913 Female, age 42, unknown 44.6
1895 Male, age 76, right hemisphere 43.7
2668 Female, age 75, unknown 43.2
1995 Male, age 72, unknown 42.9
2587 Male, age 74, left hemisphere 41.4
Ventral tegmental area
nTPM: 42.7
2021 Male, age 53, unknown 53.2
1942 Male, age 51, unknown 46.5
1915 Female, age 42, unknown 41.3
2218 Male, age 76, both hemispheres 39.3
2410 Female, age 72, unknown 39.3
2223 Female, age 72, unknown 36.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.4
Samples: 139

Max nTPM: 14.3
Min nTPM: 4.2
Std nTPM: 1.7
Median nTPM: 7.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 14.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 11.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 11.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 10.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 10.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 10.5
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 10.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 10.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 10.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 10.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 10.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.1
FF:10158-103A5 76 years, female 30.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.0
Samples: 4

Max nTPM: 30.2
Min nTPM: 23.8
Sample A Female 30.2
Sample B Female 28.5
Sample C Male 29.5
Sample D Male 23.8
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 39.3
Min nTPM: 26.9
Sample A Female 26.9
Sample B Female 29.6
Sample C Male 37.8
Sample D Male 39.3
Periaqueductal gray
nTPM: 30.8
Samples: 3

Max nTPM: 32.4
Min nTPM: 27.9
Sample B Female 32.4
Sample C Male 32.0
Sample D Male 27.9
Superior colliculi
nTPM: 32.2
Samples: 4

Max nTPM: 34.1
Min nTPM: 29.3
Sample A Female 32.3
Sample B Female 34.1
Sample C Male 32.9
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 33.8
Min nTPM: 30.3
Sample A Male 30.3
Sample B Male 32.4
Sample C Female 33.4
Sample D Female 33.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69134622 Antisense, RP_050321_03_B11, Mouse strain C57BL/6J (56 days, male) 0.1
70918868 Antisense, RP_050712_04_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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