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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:93.8 nTPM
HPA:51.7 nTPM
GTEx:93.8 nTPM
FANTOM5:8.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000263Antibody HPA011135Antibody HPA011227Antibody CAB010898Antibody CAB047338
Glandular cells Not detectedNot detectedHighNot detectedNot detected









SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.7
overview
Male, age 65
Small intestine sample 232
nTPM: 43
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 50.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 61.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 51.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 93.8
Samples: 187

Max nTPM: 195.2
Min nTPM: 21.6
Std nTPM: 37.5
Median nTPM: 94.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 195.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 179.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 175.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 173.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 169.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 166.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 155.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 155.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 155.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 154.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 154.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 151.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 150.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 150.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 150.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 148.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 147.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 147.1
GTEX-1192X-2526-SM-59868 50-59 years, male 145.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 141.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 140.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 140.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 139.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 139.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 137.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 137.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 136.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 135.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 135.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 133.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 130.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 130.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 130.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 130.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 129.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 128.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 127.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 127.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 127.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 126.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 125.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 124.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 124.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 123.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 122.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 121.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 121.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 121.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 121.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 120.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 120.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 118.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 118.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 117.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 117.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 117.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 117.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 114.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 113.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 112.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 112.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 112.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 112.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 111.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 110.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 110.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 109.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 109.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 109.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 107.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 107.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 107.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 106.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 105.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 105.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 104.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 104.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 104.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 104.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 103.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 102.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 102.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 102.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 102.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 100.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 100.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 100.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 100.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 99.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 98.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 98.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 97.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 97.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 94.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 92.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 92.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 91.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 91.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 90.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 89.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 88.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 88.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 87.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 87.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 87.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 85.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 83.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 83.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 83.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 82.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 82.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 80.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 80.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 78.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 78.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 78.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 78.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 77.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 77.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 77.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 76.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 76.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 76.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 75.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 75.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 73.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 73.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 72.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 71.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 71.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 70.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 69.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 68.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 68.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 68.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 67.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 67.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 66.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 63.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 63.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 62.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 62.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 60.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 58.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 58.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 58.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 58.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 57.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 57.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 55.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 51.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 51.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 50.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 49.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 49.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 49.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 48.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 48.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 48.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 48.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 48.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 46.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 46.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 46.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 45.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 44.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 42.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 42.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 42.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 42.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 42.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 41.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 40.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 40.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 39.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 39.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 38.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 38.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 37.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 36.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 36.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 35.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 35.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 34.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 31.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 29.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 21.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 8.3
FF:10024-101D6 15,40,85 years, mixed 8.3

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