MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA Brain:42.6 nTPM
GTEx:5.7 nTPM
FANTOM5:52.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.6
1830 Male, age 51, unknown 46.7
1833 Male, age 53, unknown 42.7
2666 Male, age 74, left hemisphere 41.7
2219 Male, age 76, both hemispheres 40.2
2828 Female, age 72, unknown 38.6
2019 Male, age 18, unknown 38.1
1827 Male, age 72, unknown 37.7
2586 Male, age 75, left hemisphere 37.2
1870 Female, age 42, unknown 36.9
2411 Female, age 72, unknown 36.2
Dorsal raphe nucleus
nTPM: 35.8
2750 Male, age 76, both hemispheres 38.7
2047 Male, age 72, unknown 37.6
2016 Female, age 72, unknown 37.5
1828 Male, age 53, unknown 36.2
2298 Female, age 72, unknown 29.0
Inferior colliculus
nTPM: 37.5
2849 Male, age 72, unknown 40.8
1890 Male, age 53, unknown 39.3
1848 Female, age 42, unknown 37.8
2097 Female, age 72, unknown 31.9
Median raphe nucleus
nTPM: 38.1
2220 Male, age 76, midline 38.1
Periaquaductal grey, anterior
nTPM: 34.6
1947 Male, age 18, unknown 39.3
1795 Male, age 51, unknown 34.0
2502 Female, age 75, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 39.2
2850 Male, age 76, both hemispheres 43.6
1831 Male, age 72, unknown 42.1
2464 Female, age 72, unknown 39.8
1840 Male, age 53, unknown 31.3
Periaquaductal grey, lateral
nTPM: 42.6
2140 Male, age 76, both hemispheres 50.6
2272 Male, age 74, both hemispheres 39.1
2053 Male, age 18, unknown 38.1
Pretectal area
nTPM: 38.2
2407 Male, age 75, both hemispheres 46.6
2316 Male, age 76, right hemisphere 45.2
2825 Male, age 18, unknown 41.5
1815 Male, age 53, unknown 39.4
2224 Female, age 72, unknown 36.6
2667 Female, age 75, unknown 36.3
1944 Female, age 72, unknown 35.7
1817 Female, age 42, unknown 35.4
1816 Male, age 51, unknown 34.8
2007 Male, age 72, unknown 34.5
2273 Male, age 74, both hemispheres 34.5
Red nucleus
nTPM: 41.8
2823 Male, age 76, right hemisphere 48.3
1865 Male, age 51, unknown 45.7
1904 Male, age 53, unknown 45.0
2584 Male, age 75, left hemisphere 44.3
2588 Male, age 74, left hemisphere 44.0
2725 Female, age 75, unknown 42.6
2503 Female, age 72, unknown 41.8
2227 Male, age 72, unknown 40.2
2769 Male, age 72, unknown 39.5
1954 Female, age 42, unknown 38.2
2785 Male, age 18, unknown 36.6
1821 Female, age 72, unknown 36.1
Substantia nigra
nTPM: 37.7
2699 Male, age 18, unknown 44.6
2590 Female, age 75, unknown 41.3
2665 Male, age 74, both hemispheres 39.1
2583 Male, age 75, right hemisphere 38.6
2241 Male, age 72, unknown 38.4
1941 Male, age 53, unknown 36.9
1916 Female, age 42, unknown 35.7
1851 Male, age 51, unknown 35.6
1889 Female, age 72, unknown 34.0
2409 Female, age 72, unknown 32.9
Superior colliculus
nTPM: 37.5
1913 Female, age 42, unknown 43.9
1895 Male, age 76, right hemisphere 39.6
2668 Female, age 75, unknown 39.4
2664 Male, age 75, both hemispheres 38.4
1995 Male, age 72, unknown 37.1
2087 Female, age 72, unknown 37.0
2587 Male, age 74, left hemisphere 36.9
1839 Male, age 51, unknown 35.6
1796 Male, age 53, unknown 34.4
2261 Male, age 18, unknown 33.1
Ventral tegmental area
nTPM: 37.0
2218 Male, age 76, both hemispheres 41.7
2021 Male, age 53, unknown 39.1
2410 Female, age 72, unknown 38.8
1942 Male, age 51, unknown 34.8
2223 Female, age 72, unknown 34.7
1915 Female, age 42, unknown 32.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.7
Samples: 139

Max nTPM: 9.4
Min nTPM: 2.8
Std nTPM: 1.1
Median nTPM: 5.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 9.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 9.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 8.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 8.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 8.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 7.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 7.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 7.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 7.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 7.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.0
FF:10158-103A5 76 years, female 52.0

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