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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:99.1 nTPM
HPA:85.7 nTPM
GTEx:99.1 nTPM
FANTOM5:86.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA054094Antibody HPA054559Antibody CAB022069
Endocrine cells High--
Enterocytes High--
Enterocytes - Microvilli Not detected--
Glandular cells -HighHigh
Goblet cells High--
Paneth cells Medium--



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.7
overview
Male, age 65
Small intestine sample 232
nTPM: 95.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 77.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 84.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 85.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 99.1
Samples: 187

Max nTPM: 175.7
Min nTPM: 69.3
Std nTPM: 12.4
Median nTPM: 97.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 175.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 135.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 128.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 127.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 123.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 121.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 120.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 120.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 119.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 119.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 119.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 119.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 117.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 116.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 116.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 116.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 115.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 115.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 114.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 114.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 114.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 113.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 112.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 112.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 112.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 111.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 111.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 110.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 110.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 110.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 110.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 109.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 109.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 109.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 109.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 108.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 107.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 107.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 107.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 107.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 106.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 106.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 106.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 106.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 106.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 105.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 104.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 104.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 104.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 104.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 104.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 104.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 104.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 104.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 103.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 103.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 103.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 103.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 103.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 102.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 102.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 102.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 102.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 102.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 101.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 101.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 101.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 101.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 101.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 101.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 100.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 100.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 100.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 100.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 100.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 99.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 99.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 99.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 99.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 99.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 98.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 98.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 98.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 98.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 98.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 98.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 98.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 97.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 97.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 97.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 97.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 97.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 97.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 97.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 97.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 96.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 96.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 96.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 96.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 96.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 96.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 96.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 96.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 96.3
GTEX-1192X-2526-SM-59868 50-59 years, male 96.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 96.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 96.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 96.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 96.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 95.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 95.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 95.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 95.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 95.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 95.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 95.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 95.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 95.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 94.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 94.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 94.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 94.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 94.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 94.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 93.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 93.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 93.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 93.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 93.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 93.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 93.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 92.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 92.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 92.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 92.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 92.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 92.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 92.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 92.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 91.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 91.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 91.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 91.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 91.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 91.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 90.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 90.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 90.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 90.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 90.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 89.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 89.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 89.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 89.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 89.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 89.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 89.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 89.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 88.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 88.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 87.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 87.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 87.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 87.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 87.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 87.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 86.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 86.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 86.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 86.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 85.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 83.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 82.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 82.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 82.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 81.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 81.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 80.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 80.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 80.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 79.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 79.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 79.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 77.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 74.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 74.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 69.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 86.3
FF:10024-101D6 15,40,85 years, mixed 86.3

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