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PRPS1
HPA
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  • PRPS1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PRPS1
Synonyms CMTX5, DFN2, DFNX1, PPRibP, PRS-I
Gene descriptioni

Full gene name according to HGNC.

Phosphoribosyl pyrophosphate synthetase 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Potential drug targets
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome X
Cytoband q22.3
Chromosome location (bp) 107628428 - 107651993
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000147224 (version 109)
Entrez gene 5631
HGNC HGNC:9462
UniProt P60891 (UniProt - Evidence at protein level)
neXtProt NX_P60891
GeneCards PRPS1
Antibodypedia PRPS1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Catalyzes the synthesis of phosphoribosylpyrophosphate (PRPP) that is essential for nucleotide synthesis.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Kinase, Transferase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Nucleotide biosynthesis
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

ATP-binding, Magnesium, Metal-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes an enzyme that catalyzes the phosphoribosylation of ribose 5-phosphate to 5-phosphoribosyl-1-pyrophosphate, which is necessary for purine metabolism and nucleotide biosynthesis. Defects in this gene are a cause of phosphoribosylpyrophosphate synthetase superactivity, Charcot-Marie-Tooth disease X-linked recessive type 5 and Arts Syndrome. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PRPS1-201
ENSP00000361495
ENST00000372418
B1ALA9
[Direct mapping] Ribose-phosphate pyrophosphokinase 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of nucleotide metabolism
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Neurodegenerative diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000287 [magnesium ion binding]
GO:0004749 [ribose phosphate diphosphokinase activity]
GO:0009165 [nucleotide biosynthetic process]
Show all
285 aa
31.4 kDa
No 0
PRPS1-202
ENSP00000361496
ENST00000372419
B1ALA7
[Direct mapping] Ribose-phosphate pyrophosphokinase 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of nucleotide metabolism
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Neurodegenerative diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000287 [magnesium ion binding]
GO:0004749 [ribose phosphate diphosphokinase activity]
GO:0009165 [nucleotide biosynthetic process]
Show all
168 aa
18.5 kDa
No 0
PRPS1-203
ENSP00000361505
ENST00000372428
A0A0A0MRQ9
[Direct mapping] Ribose-phosphate pyrophosphokinase 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of nucleotide metabolism
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Neurodegenerative diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000287 [magnesium ion binding]
GO:0004749 [ribose phosphate diphosphokinase activity]
GO:0009165 [nucleotide biosynthetic process]
Show all
76 aa
8.2 kDa
No 0
PRPS1-204
ENSP00000361512
ENST00000372435
P60891
[Direct mapping] Ribose-phosphate pyrophosphokinase 1
Show all
Enzymes
   ENZYME proteins
   Transferases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Potential drug targets
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of nucleotide metabolism
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Neurodegenerative diseases
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0000287 [magnesium ion binding]
GO:0002189 [ribose phosphate diphosphokinase complex]
GO:0004749 [ribose phosphate diphosphokinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006015 [5-phosphoribose 1-diphosphate biosynthetic process]
GO:0006144 [purine nucleobase metabolic process]
GO:0006164 [purine nucleotide biosynthetic process]
GO:0006221 [pyrimidine nucleotide biosynthetic process]
GO:0007399 [nervous system development]
GO:0009156 [ribonucleoside monophosphate biosynthetic process]
GO:0009165 [nucleotide biosynthetic process]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0034418 [urate biosynthetic process]
GO:0042802 [identical protein binding]
GO:0042803 [protein homodimerization activity]
GO:0044249 [cellular biosynthetic process]
GO:0046101 [hypoxanthine biosynthetic process]
GO:0046872 [metal ion binding]
GO:0071704 [organic substance metabolic process]
Show all
318 aa
34.8 kDa
No 0
PRPS1-205
ENSP00000496286
ENST00000643795
A0A2R8Y7H4
[Direct mapping] Ribose-phosphate pyrophosphokinase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of nucleotide metabolism
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Neurodegenerative diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000287 [magnesium ion binding]
GO:0004749 [ribose phosphate diphosphokinase activity]
GO:0005524 [ATP binding]
GO:0006015 [5-phosphoribose 1-diphosphate biosynthetic process]
GO:0009156 [ribonucleoside monophosphate biosynthetic process]
GO:0009165 [nucleotide biosynthetic process]
GO:0016301 [kinase activity]
GO:0016310 [phosphorylation]
GO:0016740 [transferase activity]
GO:0044249 [cellular biosynthetic process]
GO:0046872 [metal ion binding]
GO:0071704 [organic substance metabolic process]
Show all
321 aa
35.4 kDa
No 1
PRPS1-209
ENSP00000495801
ENST00000646815
Q15244
[Direct mapping] Phosphoribosylpyrophosphate synthetase isoform I; Ribose-phosphate pyrophosphokinase 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of nucleotide metabolism
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Neurodegenerative diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000287 [magnesium ion binding]
GO:0004749 [ribose phosphate diphosphokinase activity]
GO:0009165 [nucleotide biosynthetic process]
Show all
40 aa
4.4 kDa
No 0
PRPS1-214
ENSP00000502347
ENST00000675082
A0A6Q8PGP2
[Direct mapping] Ribose-phosphate pyrophosphokinase 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of nucleotide metabolism
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Neurodegenerative diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000287 [magnesium ion binding]
GO:0004749 [ribose phosphate diphosphokinase activity]
GO:0009165 [nucleotide biosynthetic process]
Show all
95 aa
10.4 kDa
No 0
PRPS1-221
ENSP00000502070
ENST00000675875
A0A6Q8PG33
[Direct mapping] Ribose-phosphate pyrophosphokinase 1
Show all
Metabolic proteins
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   DeepTMHMM predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of nucleotide metabolism
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Neurodegenerative diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016020 [membrane]
Show all
49 aa
5.6 kDa
No 0
PRPS1-222
ENSP00000502707
ENST00000675921
A0A6Q8PHI4
[Direct mapping] Ribose-phosphate pyrophosphokinase 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of nucleotide metabolism
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Neurodegenerative diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000287 [magnesium ion binding]
GO:0004749 [ribose phosphate diphosphokinase activity]
GO:0009165 [nucleotide biosynthetic process]
Show all
92 aa
10.3 kDa
No 0
PRPS1-223
ENSP00000502780
ENST00000676092
A0A6Q8PHK9
[Direct mapping] Ribose-phosphate pyrophosphokinase 1
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital disorders of metabolism
   Congenital disorders of nucleotide metabolism
   Congenital malformations
   Other congenital malformations
   Nervous system diseases
   Neurodegenerative diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000287 [magnesium ion binding]
GO:0004749 [ribose phosphate diphosphokinase activity]
GO:0009165 [nucleotide biosynthetic process]
Show all
121 aa
13.1 kDa
No 0

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