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MCPH1
HPA
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  • MCPH1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

MCPH1
Synonyms BRIT1, FLJ12847
Gene descriptioni

Full gene name according to HGNC.

Microcephalin 1
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 8
Cytoband p23.1
Chromosome location (bp) 6406592 - 6648508
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

15
Ensembl ENSG00000147316 (version 109)
Entrez gene 79648
HGNC HGNC:6954
UniProt Q8NEM0 (UniProt - Evidence at protein level)
neXtProt NX_Q8NEM0
GeneCards MCPH1
Antibodypedia MCPH1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Implicated in chromosome condensation and DNA damage induced cellular responses. May play a role in neurogenesis and regulation of the size of the cerebral cortex.... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a DNA damage response protein. The encoded protein may play a role in G2/M checkpoint arrest via maintenance of inhibitory phosphorylation of cyclin-dependent kinase 1. Mutations in this gene have been associated with primary autosomal recessive microcephaly 1 and premature chromosome condensation syndrome. Alternatively spliced transcript variants have been described. [provided by RefSeq, Feb 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
MCPH1-201
ENSP00000342924
ENST00000344683
Q8NEM0
[Direct mapping] Microcephalin
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000132 [establishment of mitotic spindle orientation]
GO:0000278 [mitotic cell cycle]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0010468 [regulation of gene expression]
GO:0021987 [cerebral cortex development]
GO:0042802 [identical protein binding]
GO:0043549 [regulation of kinase activity]
GO:0046605 [regulation of centrosome cycle]
GO:0050727 [regulation of inflammatory response]
GO:0060348 [bone development]
GO:0060623 [regulation of chromosome condensation]
GO:0071539 [protein localization to centrosome]
GO:0097150 [neuronal stem cell population maintenance]
Show all
835 aa
92.8 kDa
No 0
MCPH1-203
ENSP00000430962
ENST00000519480
Q8NEM0
[Direct mapping] Microcephalin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000278 [mitotic cell cycle]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0021987 [cerebral cortex development]
GO:0042802 [identical protein binding]
Show all
610 aa
67.9 kDa
No 0
MCPH1-204
ENSP00000509664
ENST00000521129
A0A8I5KYD2
[Direct mapping] Microcephalin
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
Show all
166 aa
18.3 kDa
No 0
MCPH1-207
ENSP00000430768
ENST00000522905
Q8NEM0
[Direct mapping] Microcephalin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000278 [mitotic cell cycle]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0021987 [cerebral cortex development]
GO:0042802 [identical protein binding]
Show all
562 aa
62.3 kDa
No 0
MCPH1-209
ENSP00000510001
ENST00000685179
A0A8I5KR64
[Direct mapping] Microcephalin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0021987 [cerebral cortex development]
Show all
608 aa
67.7 kDa
No 0
MCPH1-210
ENSP00000509053
ENST00000686750
A0A8I5KRI7
[Direct mapping] Microcephalin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0021987 [cerebral cortex development]
Show all
580 aa
64.7 kDa
No 0
MCPH1-213
ENSP00000510583
ENST00000687413
A0A8I5KWR1
[Direct mapping] Microcephalin
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
Show all
180 aa
19.9 kDa
No 0
MCPH1-224
ENSP00000509554
ENST00000689348
A0A8I5KV10
[Direct mapping] Microcephalin
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0021987 [cerebral cortex development]
Show all
875 aa
96.7 kDa
No 0
MCPH1-225
ENSP00000509054
ENST00000689633
A0A8I5KR97
[Direct mapping] Microcephalin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0021987 [cerebral cortex development]
Show all
742 aa
82.4 kDa
No 0
MCPH1-226
ENSP00000509722
ENST00000689736
A0A8I5QJK3
[Direct mapping] Microcephalin
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
Show all
365 aa
41.3 kDa
No 0
MCPH1-230
ENSP00000510400
ENST00000690708
A0A8I5KXJ5
[Direct mapping] Microcephalin
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
Show all
450 aa
50.7 kDa
No 0
MCPH1-231
ENSP00000510536
ENST00000690826
A0A8I5KW78
[Direct mapping] Microcephalin
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0021987 [cerebral cortex development]
Show all
830 aa
92.1 kDa
No 0
MCPH1-232
ENSP00000510652
ENST00000691435
A0A8I5KZ89
[Direct mapping] Microcephalin
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0021987 [cerebral cortex development]
Show all
744 aa
83 kDa
No 0
MCPH1-236
ENSP00000509971
ENST00000692836
A0A8I5KX36
[Direct mapping] Microcephalin
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0021987 [cerebral cortex development]
Show all
890 aa
98.6 kDa
No 0
MCPH1-237
ENSP00000509072
ENST00000692938
A0A8I5KPV6
[Direct mapping] Microcephalin
Show all
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Congenital malformations
   Congenital malformations of the nervous system
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005654 [nucleoplasm]
GO:0005815 [microtubule organizing center]
GO:0005856 [cytoskeleton]
GO:0021987 [cerebral cortex development]
Show all
871 aa
96.8 kDa
No 0

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