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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:176.5 nTPM
FANTOM5:110.5 Scaled Tags Per Million
Pig:176.8 nTPM
Allen mouse:9.7 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.5
Sample id Sample description nTPM
Area postrema
nTPM: 66.8
2054 Male, age 76, both hemispheres 95.1
2306 Male, age 80, both hemispheres 57.3
2799 Male, age 61, both hemispheres 48.0
Dorsal medullary reticular nucleus
nTPM: 126.0
2040 Female, age 85, both hemispheres 199.3
2088 Male, age 76, both hemispheres 90.3
2373 Male, age 61, both hemispheres 88.4
Dorsal motor vagal complex
nTPM: 109.2
2133 Female, age 91, both hemispheres 201.0
2000 Male, age 74, unknown 155.2
2844 Male, age 55, unknown 133.3
2813 Female, age 72, unknown 112.7
2643 Male, age 74, both hemispheres 96.7
2807 Female, age 85, both hemispheres 70.1
2185 Male, age 76, both hemispheres 53.1
2797 Male, age 61, both hemispheres 51.7
Gigantocellular reticular nuclei, medullary
nTPM: 122.3
2462 Male, age 74, both hemispheres 206.0
1876 Female, age 85, both hemispheres 139.3
2022 Male, age 76, right hemisphere 117.8
2310 Male, age 80, both hemispheres 111.8
2387 Female, age 91, both hemispheres 90.9
2314 Male, age 61, both hemispheres 67.9
Gigantocellular reticular nuclei, pars
nTPM: 126.2
2168 Male, age 76, both hemispheres 194.3
2084 Female, age 85, both hemispheres 154.3
2336 Male, age 61, both hemispheres 110.9
2706 Male, age 80, both hemispheres 88.5
2330 Male, age 80, both hemispheres 83.0
Inferior olive
nTPM: 74.2
2563 Male, age 74, both hemispheres 95.5
2085 Female, age 85, both hemispheres 80.6
2178 Male, age 61, both hemispheres 69.0
2628 Female, age 91, both hemispheres 65.9
2379 Male, age 80, both hemispheres 60.1
Lateral medullary reticular nucleus
nTPM: 112.8
2305 Male, age 74, both hemispheres 161.0
2044 Male, age 76, both hemispheres 159.5
2190 Female, age 85, both hemispheres 100.2
2852 Male, age 80, both hemispheres 92.0
2804 Female, age 91, both hemispheres 87.8
2374 Male, age 61, both hemispheres 76.1
Medial olivary nucleus
nTPM: 80.3
1943 Male, age 61, both hemispheres 87.2
2851 Male, age 80, both hemispheres 84.2
1962 Male, age 76, both hemispheres 78.0
2138 Female, age 91, both hemispheres 71.6
Medial vestibular nucleus
nTPM: 146.0
2134 Male, age 76, both hemispheres 167.8
2743 Female, age 85, both hemispheres 156.9
2801 Male, age 74, both hemispheres 147.3
2093 Male, age 80, both hemispheres 140.9
2803 Female, age 91, both hemispheres 139.2
2624 Male, age 61, both hemispheres 123.9
Motor hypoglossal nucleus
nTPM: 127.8
2132 Female, age 85, both hemispheres 161.0
2125 Female, age 91, both hemispheres 157.5
2461 Male, age 61, both hemispheres 131.3
2182 Male, age 80, both hemispheres 97.5
2277 Male, age 76, both hemispheres 91.9
Nucleus ambiguus
nTPM: 104.9
2096 Female, age 85, both hemispheres 139.1
2071 Male, age 76, both hemispheres 70.7
Nucleus cuneatus
nTPM: 85.3
2564 Male, age 74, both hemispheres 119.7
2131 Male, age 76, both hemispheres 117.6
2376 Male, age 61, both hemispheres 99.3
2562 Male, age 61, both hemispheres 93.2
2100 Male, age 76, both hemispheres 84.5
2381 Male, age 80, both hemispheres 69.9
2808 Female, age 85, both hemispheres 66.3
2380 Male, age 80, both hemispheres 64.1
2805 Female, age 91, both hemispheres 53.4
Nucleus gracilis
nTPM: 80.6
2627 Male, age 74, both hemispheres 123.5
2382 Male, age 80, both hemispheres 61.0
2299 Female, age 85, both hemispheres 57.5
Nucleus raphe obscurus
nTPM: 81.5
2800 Male, age 61, midline 101.0
2845 Female, age 85, midline 98.1
2142 Male, age 76, midline 45.4
Nucleus raphe pallidus
nTPM: 116.9
1924 Male, age 61, midline 153.0
2183 Male, age 80, midline 149.0
2145 Male, age 76, midline 48.8
Nucleus tractus solitarii
nTPM: 121.1
2144 Female, age 91, right hemisphere 195.1
2656 Male, age 76, both hemispheres 123.7
2191 Female, age 85, both hemispheres 86.5
2307 Male, age 80, both hemispheres 79.1
Parvicellular reticular nuclei
nTPM: 148.1
2119 Male, age 80, both hemispheres 161.0
2558 Male, age 74, both hemispheres 156.6
2095 Male, age 76, both hemispheres 126.7
Parvicellular reticular nuclei, medullary
nTPM: 153.4
2189 Female, age 91, both hemispheres 188.2
2091 Female, age 85, both hemispheres 158.1
2181 Male, age 80, left hemisphere 113.8
Peritrigeminal nucleus
nTPM: 145.7
2067 Female, age 85, both hemispheres 152.5
2179 Male, age 61, both hemispheres 149.1
2136 Male, age 76, both hemispheres 135.6
Prepositus hypoglossal nucleus
nTPM: 129.2
2855 Female, age 85, right hemisphere 145.6
2086 Male, age 80, both hemispheres 112.8
Spinal trigeminal nucleus, caudal
nTPM: 122.8
2390 Female, age 91, both hemispheres 199.0
2447 Male, age 76, both hemispheres 121.0
2642 Male, age 74, both hemispheres 117.2
2308 Male, age 80, both hemispheres 89.9
2312 Male, age 61, both hemispheres 86.9
Spinal trigeminal nucleus, interpolar
nTPM: 176.5
2625 Male, age 61, both hemispheres 231.1
2066 Male, age 76, right hemisphere 212.9
2033 Male, age 80, both hemispheres 160.9
2389 Female, age 91, both hemispheres 139.3
2386 Female, age 85, both hemispheres 138.1
Spinal vestibular nucleus
nTPM: 132.3
2186 Female, age 91, both hemispheres 157.5
2780 Male, age 80, both hemispheres 148.7
2806 Female, age 85, both hemispheres 130.9
2748 Male, age 76, both hemispheres 126.2
2796 Male, age 61, both hemispheres 117.3
2384 Male, age 74, both hemispheres 113.2
Superior vestibular nucleus
nTPM: 124.4
2383 Male, age 74, both hemispheres 133.7
2015 Male, age 80, both hemispheres 133.4
2061 Male, age 76, both hemispheres 106.1
Ventral medullary reticular nucleus
nTPM: 103.7
2060 Male, age 76, both hemispheres 123.1
2372 Male, age 61, both hemispheres 84.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 124.5
2741 Female, age 85, both hemispheres 166.9
1986 Male, age 76, both hemispheres 146.1
2180 Male, age 61, both hemispheres 125.6
2302 Female, age 91, both hemispheres 94.3
2118 Male, age 80, both hemispheres 89.8

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

110.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 110.5
FF:10038-101F2 18-64 years, mixed 152.3
FF:10155-103A2 76 years, female 100.9
FF:10174-103C3 60 years, female 78.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 176.8
Samples: 4

Max nTPM: 200.3
Min nTPM: 126.6
Sample A Female 200.3
Sample B Female 191.2
Sample C Male 189.1
Sample D Male 126.6

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.7
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 9.7
129 Antisense, RP_040315_01_14, Mouse strain C57BL/6J (56 days, male) 9.7
130 Antisense, RP_040315_01_14, Mouse strain C57BL/6J (56 days, male) 8.8

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